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Analysis of Glycosylation and Disulfide Bonding of Wild-Type SARS-CoV-2 Spike Glycoprotein

Journal of virology, 2022-02, Vol.96 (3), p.e0162621-e0162621

2022

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Glycosylation Benchmark Profile for HIV-1 Envelope Glycoprotein Production Based on Eleven Env Trimers

Journal of virology, 2017-05, Vol.91 (9)

2017

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Comparative Analysis of the Glycosylation Profiles of Membrane-Anchored HIV-1 Envelope Glycoprotein Trimers and Soluble gp140

Journal of virology, 2015-08, Vol.89 (16), p.8245-8257

2015

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New Glycoproteomics Software, GlycoPep Evaluator, Generates Decoy Glycopeptides de Novo and Enables Accurate False Discovery Rate Analysis for Small Data Sets

Analytical chemistry (Washington), 2014-09, Vol.86 (18), p.9212-9219

2014

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Mass Spectrometry-Based Disulfide Mapping of Lysyl Oxidase-like 2

International journal of molecular sciences, 2022-05, Vol.23 (11), p.5879

2022

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Influences on the Design and Purification of Soluble, Recombinant Native-Like HIV-1 Envelope Glycoprotein Trimers

Journal of virology, 2015-12, Vol.89 (23), p.12189-12210

2015

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Characterization of Host-Cell Line Specific Glycosylation Profiles of Early Transmitted/Founder HIV‑1 gp120 Envelope Proteins

Journal of proteome research, 2013-03, Vol.12 (3), p.1223-1234

2013

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Characterizing O‑Linked Glycopeptides by Electron Transfer Dissociation: Fragmentation Rules and Applications in Data Analysis

Analytical chemistry (Washington), 2013-09, Vol.85 (17), p.8403-8411

2013

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Stabilization of the V2 loop improves the presentation of V2 loop–associated broadly neutralizing antibody epitopes on HIV-1 envelope trimers

The Journal of biological chemistry, 2019-04, Vol.294 (14), p.5616-5631

2019

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Asymmetric conformations of cleaved HIV-1 envelope glycoprotein trimers in styrene-maleic acid lipid nanoparticles

Communications biology, 2023-05, Vol.6 (1), p.535-535, Article 535

2023

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Generation and Characterization of a Bivalent HIV-1 Subtype C gp120 Protein Boost for Proof-of-Concept HIV Vaccine Efficacy Trials in Southern Africa

PloS one, 2016-07, Vol.11 (7), p.e0157391-e0157391

2016

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Determinants of Tenascin-C and HIV-1 envelope binding and neutralization

Mucosal immunology, 2019-07, Vol.12 (4), p.1004-1012

2019

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Enabling Lipidomic Biomarker Studies for Protected Populations by Combining Noninvasive Fingerprint Sampling with MS Analysis and Machine Learning

Journal of proteome research, 2024-01

2024

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Post-translational Modifications of Recombinant Human Lysyl Oxidase-like 2 (rhLOXL2) Secreted from Drosophila S2 Cells

The Journal of biological chemistry, 2013-02, Vol.288 (8), p.5357-5363

2013

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Two New Tools for Glycopeptide Analysis Researchers: A Glycopeptide Decoy Generator and a Large Data Set of Assigned CID Spectra of Glycopeptides

Journal of proteome research, 2017-08, Vol.16 (8), p.3002-3008

2017

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Envelope deglycosylation enhances antigenicity of HIV-1 gp41 epitopes for both broad neutralizing antibodies and their unmutated ancestor antibodies

PLoS pathogens, 2011-09, Vol.7 (9), p.e1002200-e1002200

2011

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Label-Free Quantitation: A New Glycoproteomics Approach

Journal of the American Society for Mass Spectrometry, 2009-06, Vol.20 (6), p.1048-1059

2009

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Characterization of Glycosylation Profiles of HIV-1 Transmitted/Founder Envelopes by Mass Spectrometry

Journal of Virology, 2011-08, Vol.85 (16), p.8270-8284

2011

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Glycosylation and Disulfide Bond Analysis of Transiently and Stably Expressed Clade C HIV‑1 gp140 Trimers in 293T Cells Identifies Disulfide Heterogeneity Present in Both Proteins and Differences in O‑Linked Glycosylation

Journal of proteome research, 2014-09, Vol.13 (9), p.4012-4027

2014

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The Aristotle Classifier: Using the Whole Glycomic Profile To Indicate a Disease State

Analytical chemistry (Washington), 2019-09, Vol.91 (17), p.11070-11077

2019

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Stabilizing exposure of conserved epitopes by structure guided insertion of disulfide bond in HIV-1 envelope glycoprotein

PloS one, 2013-10, Vol.8 (10), p.e76139-e76139

2013

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Clinically Viable Assay for Monitoring Uromodulin Glycosylation

Journal of the American Society for Mass Spectrometry, 2021-02, Vol.32 (2), p.436-443

2021

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Comparison of HPLC/ESI-FTICR MS Versus MALDI-TOF/TOF MS for Glycopeptide Analysis of a Highly Glycosylated HIV Envelope Glycoprotein

Journal of the American Society for Mass Spectrometry, 2008-08, Vol.19 (8), p.1209-1220

2008

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Absolute Quantitation of Glycosylation Site Occupancy Using Isotopically Labeled Standards and LC-MS

Journal of the American Society for Mass Spectrometry, 2014-06, Vol.25 (6), p.1012-1017

2014

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Advances, obstacles, and opportunities for machine learning in proteomics

Cell reports physical science, 2022-10, Vol.3 (10), p.101069, Article 101069

2022

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Analysis of Glycosylation and Disulfide Bonding of Wild-Type SARS-CoV-2 Spike Glycoprotein

Glycosylation Benchmark Profile for HIV-1 Envelope Glycoprotein Production Based on Eleven Env Trimers

Comparative Analysis of the Glycosylation Profiles of Membrane-Anchored HIV-1 Envelope Glycoprotein Trimers and Soluble gp140

New Glycoproteomics Software, GlycoPep Evaluator, Generates Decoy Glycopeptides de Novo and Enables Accurate False Discovery Rate Analysis for Small Data Sets

Mass Spectrometry-Based Disulfide Mapping of Lysyl Oxidase-like 2

Influences on the Design and Purification of Soluble, Recombinant Native-Like HIV-1 Envelope Glycoprotein Trimers

Characterization of Host-Cell Line Specific Glycosylation Profiles of Early Transmitted/Founder HIV‑1 gp120 Envelope Proteins

Characterizing O‑Linked Glycopeptides by Electron Transfer Dissociation: Fragmentation Rules and Applications in Data Analysis

Stabilization of the V2 loop improves the presentation of V2 loop–associated broadly neutralizing antibody epitopes on HIV-1 envelope trimers

Asymmetric conformations of cleaved HIV-1 envelope glycoprotein trimers in styrene-maleic acid lipid nanoparticles

Generation and Characterization of a Bivalent HIV-1 Subtype C gp120 Protein Boost for Proof-of-Concept HIV Vaccine Efficacy Trials in Southern Africa

Determinants of Tenascin-C and HIV-1 envelope binding and neutralization

Enabling Lipidomic Biomarker Studies for Protected Populations by Combining Noninvasive Fingerprint Sampling with MS Analysis and Machine Learning

Post-translational Modifications of Recombinant Human Lysyl Oxidase-like 2 (rhLOXL2) Secreted from Drosophila S2 Cells

Two New Tools for Glycopeptide Analysis Researchers: A Glycopeptide Decoy Generator and a Large Data Set of Assigned CID Spectra of Glycopeptides

Envelope deglycosylation enhances antigenicity of HIV-1 gp41 epitopes for both broad neutralizing antibodies and their unmutated ancestor antibodies

Label-Free Quantitation: A New Glycoproteomics Approach

Characterization of Glycosylation Profiles of HIV-1 Transmitted/Founder Envelopes by Mass Spectrometry

Glycosylation and Disulfide Bond Analysis of Transiently and Stably Expressed Clade C HIV‑1 gp140 Trimers in 293T Cells Identifies Disulfide Heterogeneity Present in Both Proteins and Differences in O‑Linked Glycosylation

The Aristotle Classifier: Using the Whole Glycomic Profile To Indicate a Disease State

Stabilizing exposure of conserved epitopes by structure guided insertion of disulfide bond in HIV-1 envelope glycoprotein

Clinically Viable Assay for Monitoring Uromodulin Glycosylation

Comparison of HPLC/ESI-FTICR MS Versus MALDI-TOF/TOF MS for Glycopeptide Analysis of a Highly Glycosylated HIV Envelope Glycoprotein

Absolute Quantitation of Glycosylation Site Occupancy Using Isotopically Labeled Standards and LC-MS

Advances, obstacles, and opportunities for machine learning in proteomics

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