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HiGlass: web-based visual exploration and analysis of genome interaction maps

Genome Biology, 2018-08, Vol.19 (1), p.125-125, Article 125

2018

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Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web

Nature methods, 2022-05, Vol.19 (5), p.515-516

2022

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Guidelines for reporting single-cell RNA-seq experiments

Nature biotechnology, 2020-12, Vol.38 (12), p.1384-1386

2020

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The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Nature communications, 2022-05, Vol.13 (1), p.2365-11, Article 2365

2022

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Alerts and Collections for Automating Patients’ Sensemaking and Organizing of Their Electronic Health Record Data for Reflection, Planning, and Clinical Visits: Qualitative Research-Through-Design Study

JMIR human factors, 2023-08, Vol.10, p.e41552-e41552

2023

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MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data

Genome Biology, 2024-08, Vol.25 (1), p.1-15, Article 205

2024

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New Ways for Patients to Make Sense of Their Electronic Health Record Data Using the Discovery Web Application: Think-Aloud Evaluation Study

JMIR formative research, 2023-04, Vol.7, p.e41346-e41346

2023

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UpSetR: an R package for the visualization of intersecting sets and their properties

Bioinformatics (Oxford, England), 2017-09, Vol.33 (18), p.2938-2940

2017

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An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures

Molecular & cellular proteomics, 2008-11, Vol.7 (11), p.2138-2150

2008

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Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Nature communications, 2022-11, Vol.13 (1), p.6561-6561, Article 6561

2022

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Effective Communication of Personalized Risks and Patient Preferences During Surgical Informed Consent Using Data Visualization: Qualitative Semistructured Interview Study With Patients After Surgery

JMIR human factors, 2022-04, Vol.9 (2), p.e29118-e29118

2022

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UpSet: Visualization of Intersecting Sets

IEEE transactions on visualization and computer graphics, 2014-12, Vol.20 (12), p.1983-1992

2014

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Heat maps

Nature methods, 2012-03, Vol.9 (3), p.213-213

2012

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Sets and intersections

Nature methods, 2014-07, Vol.11 (8), p.779-779

2014

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LineUp: Visual Analysis of Multi-Attribute Rankings

IEEE transactions on visualization and computer graphics, 2013-12, Vol.19 (12), p.2277-2286

2013

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Mayday-a microarray data analysis workbench

Bioinformatics, 2006-04, Vol.22 (8), p.1010-1012

2006

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Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug Repurposing

IEEE transactions on visualization and computer graphics, 2023-01, Vol.29 (1), p.1266-1276

2023

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A General Framework for Comparing Embedding Visualizations Across Class-Label Hierarchies

IEEE transactions on visualization and computer graphics, 2024-09, Vol.PP, p.1-11

2024

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Gos: a declarative library for interactive genomics visualization in Python

Bioinformatics (Oxford, England), 2023-01, Vol.39 (1)

2023

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Multi-View Design Patterns and Responsive Visualization for Genomics Data

IEEE transactions on visualization and computer graphics, 2023-01, Vol.29 (1), p.559-569

2023

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Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization

IEEE transactions on visualization and computer graphics, 2022-01, Vol.28 (1), p.140-150

2022

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Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator

PLoS computational biology, 2013-01, Vol.9 (1), p.e1002834

2013

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Mapping quantitative data to color

Nature methods, 2012-08, Vol.9 (8), p.769-769

2012

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Temporal data

Nature methods, 2015-02, Vol.12 (2), p.97-97

2015

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Response to "Plotting intersections" by Lentini

Nature methods, 2015-04, Vol.12 (4), p.281-281

2015

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HiGlass: web-based visual exploration and analysis of genome interaction maps

Viv: multiscale visualization of high-resolution multiplexed bioimaging data on the web

Guidelines for reporting single-cell RNA-seq experiments

The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Alerts and Collections for Automating Patients’ Sensemaking and Organizing of Their Electronic Health Record Data for Reflection, Planning, and Clinical Visits: Qualitative Research-Through-Design Study

MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data

New Ways for Patients to Make Sense of Their Electronic Health Record Data Using the Discovery Web Application: Think-Aloud Evaluation Study

UpSetR: an R package for the visualization of intersecting sets and their properties

An Integrated, Directed Mass Spectrometric Approach for In-depth Characterization of Complex Peptide Mixtures

Author Correction: The 4D Nucleome Data Portal as a resource for searching and visualizing curated nucleomics data

Effective Communication of Personalized Risks and Patient Preferences During Surgical Informed Consent Using Data Visualization: Qualitative Semistructured Interview Study With Patients After Surgery

UpSet: Visualization of Intersecting Sets

Heat maps

Sets and intersections

LineUp: Visual Analysis of Multi-Attribute Rankings

Mayday-a microarray data analysis workbench

Extending the Nested Model for User-Centric XAI: A Design Study on GNN-based Drug Repurposing

A General Framework for Comparing Embedding Visualizations Across Class-Label Hierarchies

Gos: a declarative library for interactive genomics visualization in Python

Multi-View Design Patterns and Responsive Visualization for Genomics Data

Gosling: A Grammar-based Toolkit for Scalable and Interactive Genomics Data Visualization

Don't Wear Your New Shoes (Yet): Taking the Right Steps to Become a Successful Principal Investigator

Mapping quantitative data to color

Temporal data

Response to "Plotting intersections" by Lentini

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