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Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen

Nature communications, 2019-02, Vol.10 (1), p.754-13, Article 754

2019

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Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes

Journal of virology, 2019-01, Vol.93 (1)

2019

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Specific capture and whole-genome sequencing of viruses from clinical samples

PloS one, 2011-11, Vol.6 (11), p.e27805-e27805

2011

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The architecture of the simian varicella virus transcriptome

PLoS pathogens, 2021-11, Vol.17 (11), p.e1010084-e1010084

2021

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In vitro system using human neurons demonstrates that varicella-zoster vaccine virus is impaired for reactivation, but not latency

Proceedings of the National Academy of Sciences - PNAS, 2016-04, Vol.113 (17), p.E2403-E2412

2016

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DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing

Bioinformatics, 2022-05, Vol.38 (11), p.3113-3115

2022

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Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania

Genome research, 2011-12, Vol.21 (12), p.2129

2011

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Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples

Journal of clinical microbiology, 2015-07, Vol.53 (7), p.2230-2237

2015

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An eIF3d-dependent switch regulates HCMV replication by remodeling the infected cell translation landscape to mimic chronic ER stress

Cell reports (Cambridge), 2022-05, Vol.39 (5), p.110767-110767, Article 110767

2022

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Nanopore-Based Detection of Viral RNA Modifications

mBio, 2022-06, Vol.13 (3), p.e0370221

2022

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Viral population analysis and minority-variant detection using short read next-generation sequencing

Philosophical transactions of the Royal Society of London. Series B. Biological sciences, 2013-03, Vol.368 (1614), p.20120205

2013

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A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61

Nature communications, 2018-03, Vol.9 (1), p.1167-12, Article 1167

2018

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Chromatin dynamics and the transcriptional competence of HSV-1 genomes during lytic infections

PLoS pathogens, 2019-11, Vol.15 (11), p.e1008076-e1008076

2019

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Molecular Aspects of Varicella-Zoster Virus Latency

Viruses, 2018-06, Vol.10 (7), p.349

2018

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Deep Sequencing of Distinct Preparations of the Live Attenuated Varicella-Zoster Virus Vaccine Reveals a Conserved Core of Attenuating Single-Nucleotide Polymorphisms

Journal of virology, 2016-10, Vol.90 (19), p.8698-8704

2016

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Varicella-zoster virus VLT-ORF63 fusion transcript induces broad viral gene expression during reactivation from neuronal latency

Nature communications, 2020-12, Vol.11 (1), p.6324-12, Article 6324

2020

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A Variant Allele in Varicella-Zoster Virus Glycoprotein B Selected during Production of the Varicella Vaccine Contributes to Its Attenuation

mBio, 2022-08, Vol.13 (4), p.e0186422-e0186422

2022

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Decoding the Architecture of the Varicella-Zoster Virus Transcriptome

mBio, 2020-10, Vol.11 (5)

2020

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Novel viral splicing events and open reading frames revealed by long-read direct RNA sequencing of adenovirus transcripts

PLoS pathogens, 2022-09, Vol.18 (9), p.e1010797-e1010797

2022

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Recombination of Globally Circulating Varicella-Zoster Virus

Journal of virology, 2015-07, Vol.89 (14), p.7133-7146

2015

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Using Direct RNA Nanopore Sequencing to Deconvolute Viral Transcriptomes

Current protocols in microbiology (Online), 2020-06, Vol.57 (1), p.e99-n/a

2020

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Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6

BMC genomics, 2018-03, Vol.19 (1), p.204-204, Article 204

2018

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Evolution of cocirculating varicella-zoster virus genotypes during a chickenpox outbreak in Guinea-Bissau

Journal of virology, 2014-12, Vol.88 (24), p.13936-13946

2014

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Detection of Low Frequency Multi-Drug Resistance and Novel Putative Maribavir Resistance in Immunocompromised Pediatric Patients with Cytomegalovirus

Frontiers in microbiology, 2016-09, Vol.7, p.1317-1317

2016

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Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing

Nature communications, 2020-11, Vol.11 (1), p.6016-6016, Article 6016

2020

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Direct RNA sequencing on nanopore arrays redefines the transcriptional complexity of a viral pathogen

Going the Distance: Optimizing RNA-Seq Strategies for Transcriptomic Analysis of Complex Viral Genomes

Specific capture and whole-genome sequencing of viruses from clinical samples

The architecture of the simian varicella virus transcriptome

In vitro system using human neurons demonstrates that varicella-zoster vaccine virus is impaired for reactivation, but not latency

DRUMMER—rapid detection of RNA modifications through comparative nanopore sequencing

Chromosome and gene copy number variation allow major structural change between species and strains of Leishmania

Rapid Whole-Genome Sequencing of Mycobacterium tuberculosis Isolates Directly from Clinical Samples

An eIF3d-dependent switch regulates HCMV replication by remodeling the infected cell translation landscape to mimic chronic ER stress

Nanopore-Based Detection of Viral RNA Modifications

Viral population analysis and minority-variant detection using short read next-generation sequencing

A spliced latency-associated VZV transcript maps antisense to the viral transactivator gene 61

Chromatin dynamics and the transcriptional competence of HSV-1 genomes during lytic infections

Molecular Aspects of Varicella-Zoster Virus Latency

Deep Sequencing of Distinct Preparations of the Live Attenuated Varicella-Zoster Virus Vaccine Reveals a Conserved Core of Attenuating Single-Nucleotide Polymorphisms

Varicella-zoster virus VLT-ORF63 fusion transcript induces broad viral gene expression during reactivation from neuronal latency

A Variant Allele in Varicella-Zoster Virus Glycoprotein B Selected during Production of the Varicella Vaccine Contributes to Its Attenuation

Decoding the Architecture of the Varicella-Zoster Virus Transcriptome

Novel viral splicing events and open reading frames revealed by long-read direct RNA sequencing of adenovirus transcripts

Recombination of Globally Circulating Varicella-Zoster Virus

Using Direct RNA Nanopore Sequencing to Deconvolute Viral Transcriptomes

Comparative genomic, transcriptomic, and proteomic reannotation of human herpesvirus 6

Evolution of cocirculating varicella-zoster virus genotypes during a chickenpox outbreak in Guinea-Bissau

Detection of Low Frequency Multi-Drug Resistance and Novel Putative Maribavir Resistance in Immunocompromised Pediatric Patients with Cytomegalovirus

Direct RNA sequencing reveals m6A modifications on adenovirus RNA are necessary for efficient splicing

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