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Differential network connectivity analysis for microbiome data adjusted for clinical covariates using jackknife pseudo-values

BMC bioinformatics, 2024-03, Vol.25 (1), p.117-117

2024

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PRANA: an R package for differential co-expression network analysis with the presence of additional covariates

BMC genomics, 2023-11, Vol.24 (1), p.687-687, Article 687

2023

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clValid : An R Package for Cluster Validation

Journal of statistical software, 2008, Vol.25 (4)

2008

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A novel probabilistic generator for large-scale gene association networks

PloS one, 2021-11, Vol.16 (11), p.e0259193-e0259193

2021

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Integrating gene regulatory pathways into differential network analysis of gene expression data

Scientific reports, 2019-04, Vol.9 (1), p.5479-5479, Article 5479

2019

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RankAggreg, an R package for weighted rank aggregation

BMC bioinformatics, 2009-02, Vol.10 (1), p.62-62, Article 62

2009

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SeqNet: An R Package for Generating Gene-Gene Networks and Simulating RNA-Seq Data

Journal of statistical software, 2021-07, Vol.98 (12)

2021

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Statistical Analysis of Microbiome Data

1st Edition 2021, 2021

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Regression analysis of a future state entry time distribution conditional on a past state occupation in a progressive multistate model

Statistical methods in medical research, 2023-12, Vol.32 (12), p.2285-2298

2023

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A statistical framework for differential network analysis from microarray data

BMC bioinformatics, 2010-02, Vol.11 (1), p.95-95, Article 95

2010

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A pseudo-value regression approach for differential network analysis of co-expression data

BMC bioinformatics, 2023-01, Vol.24 (1), p.8-8, Article 8

2023

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Variance estimation in tests of clustered categorical data with informative cluster size

Statistical methods in medical research, 2020-11, Vol.29 (11), p.3396-3408

2020

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Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes

BMC bioinformatics, 2006-08, Vol.7 (1), p.397-397, Article 397

2006

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Pseudo-value regression of clustered multistate current status data with informative cluster sizes

Statistical methods in medical research, 2023-08, Vol.32 (8), p.1494-1510

2023

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Identification of shared biological features in four different lung cell lines infected with SARS-CoV-2 virus through RNA-seq analysis

Frontiers in genetics, 2023-08, Vol.14, p.1235927-1235927

2023

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Informatics-aided bandgap engineering for solar materials

Computational materials science, 2014-02, Vol.83, p.185-195

2014

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EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments

PloS one, 2017-10, Vol.12 (10), p.e0187287-e0187287

2017

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Informatics guided discovery of surface structure-chemistry relationships in catalytic nanoparticles

The Journal of chemical physics, 2014-03, Vol.140 (9), p.094705-094705

2014

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The Analysis of Gene Expression Data Incorporating Tumor Purity Information

Frontiers in genetics, 2021-08, Vol.12, p.642759-642759

2021

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Metagenomic Geolocation Prediction Using an Adaptive Ensemble Classifier

Frontiers in genetics, 2021-04, Vol.12, p.642282-642282

2021

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Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles

Biology direct, 2018-05, Vol.13 (1), p.10-10, Article 10

2018

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A joint overdispersed marginalized random-effects model for analyzing two or more longitudinal ordinal responses

Statistical methods in medical research, 2019-01, Vol.28 (1), p.50-69

2019

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Inferring marginal association with paired and unpaired clustered data

Statistical methods in medical research, 2018-06, Vol.27 (6), p.1806-1817

2018

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A probability based method for selecting the optimal personalized treatment from multiple treatments

Statistical methods in medical research, 2019-03, Vol.28 (3), p.749-760

2019

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Predicting survival times for neuroblastoma patients using RNA-seq expression profiles

Biology direct, 2018-05, Vol.13 (1), p.11-11, Article 11

2018

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Differential network connectivity analysis for microbiome data adjusted for clinical covariates using jackknife pseudo-values

PRANA: an R package for differential co-expression network analysis with the presence of additional covariates

clValid : An R Package for Cluster Validation

A novel probabilistic generator for large-scale gene association networks

Integrating gene regulatory pathways into differential network analysis of gene expression data

RankAggreg, an R package for weighted rank aggregation

SeqNet: An R Package for Generating Gene-Gene Networks and Simulating RNA-Seq Data

Statistical Analysis of Microbiome Data

Regression analysis of a future state entry time distribution conditional on a past state occupation in a progressive multistate model

A statistical framework for differential network analysis from microarray data

A pseudo-value regression approach for differential network analysis of co-expression data

Variance estimation in tests of clustered categorical data with informative cluster size

Methods for evaluating clustering algorithms for gene expression data using a reference set of functional classes

Pseudo-value regression of clustered multistate current status data with informative cluster sizes

Identification of shared biological features in four different lung cell lines infected with SARS-CoV-2 virus through RNA-seq analysis

Informatics-aided bandgap engineering for solar materials

EAMA: Empirically adjusted meta-analysis for large-scale simultaneous hypothesis testing in genomic experiments

Informatics guided discovery of surface structure-chemistry relationships in catalytic nanoparticles

The Analysis of Gene Expression Data Incorporating Tumor Purity Information

Metagenomic Geolocation Prediction Using an Adaptive Ensemble Classifier

Unraveling bacterial fingerprints of city subways from microbiome 16S gene profiles

A joint overdispersed marginalized random-effects model for analyzing two or more longitudinal ordinal responses

Inferring marginal association with paired and unpaired clustered data

A probability based method for selecting the optimal personalized treatment from multiple treatments

Predicting survival times for neuroblastoma patients using RNA-seq expression profiles

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