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Accounting for overlapping annotations in genomic prediction models of complex traits

BMC bioinformatics, 2022-09, Vol.23 (1), p.1-365, Article 365

2022

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An evaluation of the predictive performance and mapping power of the BayesR model for genomic prediction

G3 : genes - genomes - genetics, 2021-10, Vol.11 (11)

2021

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The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds

Genetics selection evolution (Paris), 2019-09, Vol.51 (1), p.52-52, Article 52

2019

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Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle

Genetics selection evolution (Paris), 2017-09, Vol.49 (1), p.68-68, Article 68

2017

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Confirmed effects of candidate variants for milk production, udder health, and udder morphology in dairy cattle

Genetics selection evolution (Paris), 2020-10, Vol.52 (1), p.55-55, Article 55

2020

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Sequence-based GWAS meta-analyses for beef production traits

Genetics selection evolution (Paris), 2023-10, Vol.55 (1), p.70-70, Article 70

2023

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High-density marker imputation accuracy in sixteen French cattle breeds

Genetics selection evolution (Paris), 2013-09, Vol.45 (1), p.33-33, Article 33

2013

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Which Individuals To Choose To Update the Reference Population? Minimizing the Loss of Genetic Diversity in Animal Genomic Selection Programs

G3 : genes - genomes - genetics, 2018-01, Vol.8 (1), p.113-121

2018

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Intensified Use of Reproductive Technologies and Reduced Dimensions of Breeding Schemes Put Genetic Diversity at Risk in Dairy Cattle Breeds

Animals (Basel), 2020-10, Vol.10 (10), p.1903

2020

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Genomic selection in domestic animals: Principles, applications and perspectives

Comptes rendus. Biologies, 2016-07, Vol.339 (7-8), p.274-277

2016

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The combined use of linkage disequilibrium-based haploblocks and allele frequency-based haplotype selection methods enhances genomic evaluation accuracy in dairy cattle

Journal of dairy science, 2017, Vol.100 (4), p.2905-2908

2017

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Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Nature genetics, 2018-03, Vol.50 (3), p.362-367

2018

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Short communication: The combined use of linkage disequilibrium–based haploblocks and allele frequency–based haplotype selection methods enhances genomic evaluation accuracy in dairy cattle

Journal of dairy science, 2017-04, Vol.100 (4), p.2905-2908

2017

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Efficiency of multi-breed genomic selection for dairy cattle breeds with different sizes of reference population

Journal of dairy science, 2014, Vol.97 (6), p.3918-3929

2014

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Correction: Sequence-based GWAS meta-analyses for beef production traits

Genetics selection evolution (Paris), 2023-11, Vol.55 (1), p.1-1

2023

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Use of meta-analyses and joint analyses to select variants in whole genome sequences for genomic evaluation: An application in milk production of French dairy cattle breeds

Journal of dairy science, 2018-04, Vol.101 (4), p.3126-3139

2018

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Application of Bayesian least absolute shrinkage and selection operator (LASSO) and BayesCπ methods for genomic selection in French Holstein and Montbéliarde breeds

Journal of dairy science, 2013-01, Vol.96 (1), p.575-591

2013

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Alternative haplotype construction methods for genomic evaluation

Journal of dairy science, 2016-06, Vol.99 (6), p.4537-4546

2016

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Correction: Sequence-based GWAS meta-analyses for beef production traits

Genetics selection evolution (Paris), 2023-11, Vol.55 (1), p.79-79, Article 79

2023

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Sequence-based GWAS meta-analyses for beef production traits

Genetics selection evolution (Paris), 2023-10, Vol.55 (1)

2023

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A comparison of partial least squares (PLS) and sparse PLS regressions in genomic selection in French dairy cattle

Journal of dairy science, 2012-04, Vol.95 (4), p.2120-2131

2012

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Genomic selection in French dairy cattle

Animal production science, 2012-01, Vol.52 (3), p.115

2012

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Genomic evaluation of regional dairy cattle breeds in single‐breed and multibreed contexts

Journal of animal breeding and genetics (1986), 2017-02, Vol.134 (1), p.3-13

2017

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A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species

Genetics selection evolution (Paris), 2015-02, Vol.47 (1), p.6-6

2015

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Validation of the reshaped shared epitope HLA-DRB1 classification in rheumatoid arthritis

Arthritis research & therapy, 2006-01, Vol.8 (3), p.R79-R79

2006

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Accounting for overlapping annotations in genomic prediction models of complex traits

An evaluation of the predictive performance and mapping power of the BayesR model for genomic prediction

The impact of genomic selection on genetic diversity and genetic gain in three French dairy cattle breeds

Within-breed and multi-breed GWAS on imputed whole-genome sequence variants reveal candidate mutations affecting milk protein composition in dairy cattle

Confirmed effects of candidate variants for milk production, udder health, and udder morphology in dairy cattle

Sequence-based GWAS meta-analyses for beef production traits

High-density marker imputation accuracy in sixteen French cattle breeds

Which Individuals To Choose To Update the Reference Population? Minimizing the Loss of Genetic Diversity in Animal Genomic Selection Programs

Intensified Use of Reproductive Technologies and Reduced Dimensions of Breeding Schemes Put Genetic Diversity at Risk in Dairy Cattle Breeds

Genomic selection in domestic animals: Principles, applications and perspectives

The combined use of linkage disequilibrium-based haploblocks and allele frequency-based haplotype selection methods enhances genomic evaluation accuracy in dairy cattle

Meta-analysis of genome-wide association studies for cattle stature identifies common genes that regulate body size in mammals

Short communication: The combined use of linkage disequilibrium–based haploblocks and allele frequency–based haplotype selection methods enhances genomic evaluation accuracy in dairy cattle

Efficiency of multi-breed genomic selection for dairy cattle breeds with different sizes of reference population

Correction: Sequence-based GWAS meta-analyses for beef production traits

Use of meta-analyses and joint analyses to select variants in whole genome sequences for genomic evaluation: An application in milk production of French dairy cattle breeds

Application of Bayesian least absolute shrinkage and selection operator (LASSO) and BayesCπ methods for genomic selection in French Holstein and Montbéliarde breeds

Alternative haplotype construction methods for genomic evaluation

Correction: Sequence-based GWAS meta-analyses for beef production traits

Sequence-based GWAS meta-analyses for beef production traits

A comparison of partial least squares (PLS) and sparse PLS regressions in genomic selection in French dairy cattle

Genomic selection in French dairy cattle

Genomic evaluation of regional dairy cattle breeds in single‐breed and multibreed contexts

A comparison of methods for whole-genome QTL mapping using dense markers in four livestock species

Validation of the reshaped shared epitope HLA-DRB1 classification in rheumatoid arthritis

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