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Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

Nature communications, 2021-03, Vol.12 (1), p.1456-1456, Article 1456

2021

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Systematic calibration of epitranscriptomic maps using a synthetic modification-free RNA library

Nature methods, 2021-10, Vol.18 (10), p.1213

2021

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scDIOR: single cell RNA-seq data IO software

BMC bioinformatics, 2022-01, Vol.23 (1), p.16-16, Article 16

2022

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Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection

Protein & cell, 2021-09, Vol.12 (9), p.717-733

2021

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The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters

Cell research, 2015-01, Vol.25 (1), p.80-92

2015

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Relaxed 3D genome conformation facilitates the pluripotent to totipotent-like state transition in embryonic stem cells

Nucleic acids research, 2021-12, Vol.49 (21), p.12167

2021

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Chromatin Accessibility Dynamics during iPSC Reprogramming

Cell stem cell, 2017-12, Vol.21 (6), p.819-833.e6

2017

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Sequential introduction of reprogramming factors reveals a time-sensitive requirement for individual factors and a sequential EMT-MET mechanism for optimal reprogramming

Nature cell biology, 2013-07, Vol.15 (7), p.829

2013

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Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients

Protein & cell, 2020-09, Vol.11 (9), p.680-687

2020

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A Mesenchymal-to-Epithelial Transition Initiates and Is Required for the Nuclear Reprogramming of Mouse Fibroblasts

Cell stem cell, 2010-07, Vol.7 (1), p.51-63

2010

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Tet and TDG Mediate DNA Demethylation Essential for Mesenchymal-to-Epithelial Transition in Somatic Cell Reprogramming

Cell stem cell, 2014-04, Vol.14 (4), p.512-522

2014

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Vitamin C Enhances the Generation of Mouse and Human Induced Pluripotent Stem Cells

Cell stem cell, 2010-01, Vol.6 (1), p.71-79

2010

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Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells

Nature communications, 2019-01, Vol.10 (1), p.34-13, Article 34

2019

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AP-1 activity is a major barrier of human somatic cell reprogramming

Cellular and molecular life sciences : CMLS, 2021-08, Vol.78 (15), p.5847-5863

2021

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Practical bioinformatics pipelines for single-cell RNA-seq data analysis

Biophysics reports, 2022-06, Vol.8 (3), p.158-169

2022

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Rapamycin and other longevity‐promoting compounds enhance the generation of mouse induced pluripotent stem cells

Aging cell, 2011-10, Vol.10 (5), p.908-911

2011

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Epithelial-Mesenchymal Transition and Metabolic Switching in Cancer: Lessons From Somatic Cell Reprogramming

Frontiers in cell and developmental biology, 2020-08, Vol.8, p.760-760

2020

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BMP4 drives primed to naïve transition through PGC-like state

Nature communications, 2022-05, Vol.13 (1), p.2756-2756, Article 2756

2022

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Generation of Induced Pluripotent Stem Cell Lines from Tibetan Miniature Pig

The Journal of biological chemistry, 2009-06, Vol.284 (26), p.17634-17640

2009

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SS18 regulates pluripotent-somatic transition through phase separation

Nature communications, 2021-07, Vol.12 (1), p.4090-4090, Article 4090

2021

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YTHDF2/3 Are Required for Somatic Reprogramming through Different RNA Deadenylation Pathways

Cell reports (Cambridge), 2020-09, Vol.32 (10), p.108120-108120, Article 108120

2020

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Chromatin Accessibility Dynamics during Chemical Induction of Pluripotency

Cell stem cell, 2018-04, Vol.22 (4), p.529-542.e5

2018

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SETDB1-Mediated Cell Fate Transition between 2C-Like and Pluripotent States

Cell reports (Cambridge), 2020-01, Vol.30 (1), p.25-36.e6

2020

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Identifying transposable element expression dynamics and heterogeneity during development at the single-cell level with a processing pipeline scTE

Generation of a Broadly Useful Model for COVID-19 Pathogenesis, Vaccination, and Treatment

Systematic calibration of epitranscriptomic maps using a synthetic modification-free RNA library

scDIOR: single cell RNA-seq data IO software

Host metabolism dysregulation and cell tropism identification in human airway and alveolar organoids upon SARS-CoV-2 infection

The p53-induced lincRNA-p21 derails somatic cell reprogramming by sustaining H3K9me3 and CpG methylation at pluripotency gene promoters

Relaxed 3D genome conformation facilitates the pluripotent to totipotent-like state transition in embryonic stem cells

Chromatin Accessibility Dynamics during iPSC Reprogramming

Sequential introduction of reprogramming factors reveals a time-sensitive requirement for individual factors and a sequential EMT-MET mechanism for optimal reprogramming

Single-cell analysis reveals bronchoalveolar epithelial dysfunction in COVID-19 patients

SARS-CoV-2 envelope protein causes acute respiratory distress syndrome (ARDS)-like pathological damages and constitutes an antiviral target

A Mesenchymal-to-Epithelial Transition Initiates and Is Required for the Nuclear Reprogramming of Mouse Fibroblasts

Tet and TDG Mediate DNA Demethylation Essential for Mesenchymal-to-Epithelial Transition in Somatic Cell Reprogramming

Vitamin C Enhances the Generation of Mouse and Human Induced Pluripotent Stem Cells

Transposable elements are regulated by context-specific patterns of chromatin marks in mouse embryonic stem cells

AP-1 activity is a major barrier of human somatic cell reprogramming

Practical bioinformatics pipelines for single-cell RNA-seq data analysis

Rapamycin and other longevity‐promoting compounds enhance the generation of mouse induced pluripotent stem cells

Epithelial-Mesenchymal Transition and Metabolic Switching in Cancer: Lessons From Somatic Cell Reprogramming

BMP4 drives primed to naïve transition through PGC-like state

Generation of Induced Pluripotent Stem Cell Lines from Tibetan Miniature Pig

SS18 regulates pluripotent-somatic transition through phase separation

YTHDF2/3 Are Required for Somatic Reprogramming through Different RNA Deadenylation Pathways

Chromatin Accessibility Dynamics during Chemical Induction of Pluripotency

SETDB1-Mediated Cell Fate Transition between 2C-Like and Pluripotent States

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