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Deep sequencing for HIV-1 clinical management

Virus research, 2017-07, Vol.239, p.69-81

2017

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Array-based dynamic allele specific hybridization (Array-DASH): Optimization-free microarray processing for multiple simultaneous genomic assays

Analytical biochemistry, 2021-08, Vol.626, p.114124-114124, Article 114124

2021

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Evolution of the gut microbiome following acute HIV-1 infection

Microbiome, 2019-05, Vol.7 (1), p.73-73, Article 73

2019

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Probiotic effects on immunity and microbiome in HIV-1 discordant patients

Frontiers in immunology, 2022-12, Vol.13, p.1066036-1066036

2022

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Primary resistance to integrase strand transfer inhibitors in patients infected with diverse HIV-1 subtypes in sub-Saharan Africa

Journal of antimicrobial chemotherapy, 2018-05, Vol.73 (5), p.1167-1172

2018

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Plasma HIV‐1 tropism and risk of short‐term clinical progression to AIDS or death

Journal of the International AIDS Society, 2014-11, Vol.17 (4 Suppl 3), p.19685-n/a

2014

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Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

Scientific reports, 2020-01, Vol.10 (1), p.1634-1634, Article 1634

2020

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Low nadir CD4+ T-cell counts predict gut dysbiosis in HIV-1 infection

Mucosal immunology, 2019-01, Vol.12 (1), p.232-246

2019

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Vaccination with an HIV T-cell immunogen induces alterations in the mouse gut microbiota

NPJ biofilms and microbiomes, 2022-12, Vol.8 (1), p.104-104, Article 104

2022

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Vaccination with an HIV T-Cell Immunogen (HTI) Using DNA Primes Followed by a ChAdOx1-MVA Boost Is Immunogenic in Gut Microbiota-Depleted Mice despite Low IL-22 Serum Levels

Vaccines (Basel), 2023-10, Vol.11 (11), p.1663

2023

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Plasma HIV-1 Tropism and the Risk of Short-Term Clinical Progression to AIDS or Death

PloS one, 2017-01, Vol.12 (1), p.e0166613-e0166613

2017

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Treatment options after virological failure of first-line tenofovir-based regimens in South Africa: an analysis by deep sequencing

AIDS (London), 2016-04, Vol.30 (7), p.1137-1140

2016

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Benzyl-2-Acetamido-2-Deoxy-α-d-Galactopyranoside Increases Human Immunodeficiency Virus Replication and Viral Outgrowth Efficacy In Vitro

Frontiers in immunology, 2018-01, Vol.8, p.2010-2010

2018

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Improved Prediction of Salvage Antiretroviral Therapy Outcomes Using Ultrasensitive HIV-1 Drug Resistance Testing

Clinical infectious diseases, 2014-08, Vol.59 (4), p.578-588

2014

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Yaws re-emergence and bacterial drug resistance selection after mass administration of azithromycin: a genomic epidemiology investigation

The Lancet. Microbe, 2020-10, Vol.1 (6), p.e263-e271

2020

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RECall for Automated Genotypic Tropism Testing

Journal of Clinical Microbiology, 2013-08, Vol.51 (8), p.2754-2757

2013

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Clinically relevant thresholds for ultrasensitive HIV drug resistance testing: a multi-country nested case-control study

The lancet HIV, 2018-11, Vol.5 (11), p.e638-e646

2018

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Decreased phenotypic susceptibility to etravirine in patients with predicted genotypic sensitivity

PloS one, 2014-07, Vol.9 (7), p.e101508

2014

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Effectiveness and safety of integrase strand transfer inhibitors in Spain: a prospective real-world study

Frontiers in cellular and infection microbiology, 2023-06, Vol.13, p.1187999-1187999

2023

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Primary resistance to integrase strand transfer inhibitors in Spain using ultrasensitive HIV-1 genotyping

Journal of antimicrobial chemotherapy, 2020-12, Vol.75 (12), p.3517-3524

2020

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No detection of the NS5B S282T mutation in treatment-naïve genotype 1 HCV/HIV-1 coinfected patients using deep sequencing

Journal of clinical virology, 2013-12, Vol.58 (4), p.726-729

2013

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Gut Microbiota Linked to Sexual Preference and HIV Infection

Deep sequencing for HIV-1 clinical management

Array-based dynamic allele specific hybridization (Array-DASH): Optimization-free microarray processing for multiple simultaneous genomic assays

Safety, immunogenicity and effect on viral rebound of HTI vaccines in early treated HIV-1 infection: a randomized, placebo-controlled phase 1 trial

Evolution of the gut microbiome following acute HIV-1 infection

Probiotic effects on immunity and microbiome in HIV-1 discordant patients

Primary resistance to integrase strand transfer inhibitors in patients infected with diverse HIV-1 subtypes in sub-Saharan Africa

Monitoring SARS-CoV-2 variant transitions using differences in diagnostic cycle threshold values of target genes

Plasma HIV‐1 tropism and risk of short‐term clinical progression to AIDS or death

Performance comparison of next generation sequencing analysis pipelines for HIV-1 drug resistance testing

Switching to bictegravir/emtricitabine/tenofovir alafenamide (BIC/FTC/TAF) plus darunavir/cobicistat in heavily antiretroviral-experienced, virologically suppressed HIV-infected adults receiving complex regimens

Low nadir CD4+ T-cell counts predict gut dysbiosis in HIV-1 infection

Vaccination with an HIV T-cell immunogen induces alterations in the mouse gut microbiota

Vaccination with an HIV T-Cell Immunogen (HTI) Using DNA Primes Followed by a ChAdOx1-MVA Boost Is Immunogenic in Gut Microbiota-Depleted Mice despite Low IL-22 Serum Levels

Plasma HIV-1 Tropism and the Risk of Short-Term Clinical Progression to AIDS or Death

Treatment options after virological failure of first-line tenofovir-based regimens in South Africa: an analysis by deep sequencing

Benzyl-2-Acetamido-2-Deoxy-α-d-Galactopyranoside Increases Human Immunodeficiency Virus Replication and Viral Outgrowth Efficacy In Vitro

Improved Prediction of Salvage Antiretroviral Therapy Outcomes Using Ultrasensitive HIV-1 Drug Resistance Testing

Yaws re-emergence and bacterial drug resistance selection after mass administration of azithromycin: a genomic epidemiology investigation

RECall for Automated Genotypic Tropism Testing

Clinically relevant thresholds for ultrasensitive HIV drug resistance testing: a multi-country nested case-control study

Decreased phenotypic susceptibility to etravirine in patients with predicted genotypic sensitivity

Effectiveness and safety of integrase strand transfer inhibitors in Spain: a prospective real-world study

Primary resistance to integrase strand transfer inhibitors in Spain using ultrasensitive HIV-1 genotyping

No detection of the NS5B S282T mutation in treatment-naïve genotype 1 HCV/HIV-1 coinfected patients using deep sequencing

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