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Harnessing the power of RADseq for ecological and evolutionary genomics

Nature reviews. Genetics, 2016-02, Vol.17 (2), p.81-92

2016

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Comparative phylogeography of the ocean planet

Proceedings of the National Academy of Sciences - PNAS, 2016-07, Vol.113 (29), p.7962-7969

2016

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Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers

Molecular phylogenetics and evolution, 2020-05, Vol.146, p.106756, Article 106756

2020

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Genomic surveillance identifies potential risk factors for SARS-CoV-2 transmission at a mid-sized university in a small rural town

Scientific reports, 2023-05, Vol.13 (1), p.7902-7902, Article 7902

2023

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Author Correction: Genomic surveillance identifies potential risk factors for SARS-CoV-2 transmission at a mid-sized university in a small rural town

Scientific reports, 2023-06, Vol.13 (1), p.9874-9874, Article 9874

2023

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Multilocus evidence for globally distributed cryptic species and distinct populations across ocean gyres in a mesopelagic copepod

Molecular ecology, 2014-11, Vol.23 (22), p.5462-5479

2014

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ezRAD: a simplified method for genomic genotyping in non-model organisms

PeerJ (San Francisco, CA), 2013-11, Vol.1, p.e203-e203

2013

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A new mouse SNP genotyping assay for speed congenics: combining flexibility, affordability, and power

BMC genomics, 2021-05, Vol.22 (1), p.378-378, Article 378

2021

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Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival

Ecology and evolution, 2020-07, Vol.10 (14), p.7627-7643

2020

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Genomic Methods Take the Plunge: Recent Advances in High-Throughput Sequencing of Marine Mammals

The Journal of heredity, 2016-11, Vol.107 (6), p.481-495

2016

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Recent novel approaches for population genomics data analysis

Molecular ecology, 2014-04, Vol.23 (7), p.1661-1667

2014

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Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline

PloS one, 2013-02, Vol.8 (2), p.e55990-e55990

2013

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Temporal Stability of Genetic Structure in a Mesopelagic Copepod

PloS one, 2015-08, Vol.10 (8), p.e0136087-e0136087

2015

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Long‐lived marine species may be resilient to environmental variability through a temporal portfolio effect

Ecology and evolution, 2020-07, Vol.10 (13), p.6435-6448

2020

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Phylogeographic analyses of submesophotic snappers Etelis coruscans and Etelis "marshi" (family Lutjanidae) reveal concordant genetic structure across the Hawaiian Archipelago

PloS one, 2014-04, Vol.9 (4), p.e91665-e91665

2014

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Genomic association with pathogen carriage in bighorn sheep (Ovis canadensis)

Ecology and evolution, 2021-03, Vol.11 (6), p.2488-2502

2021

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Rolling stones and stable homes: social structure, habitat diversity and population genetics of the Hawaiian spinner dolphin (Stenella longirostris)

Molecular ecology, 2010-02, Vol.19 (4), p.732-748

2010

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High-Resolution Taxonomic Characterization Reveals Novel Human Microbial Strains with Potential as Risk Factors and Probiotics for Prediabetes and Type 2 Diabetes

Microorganisms (Basel), 2023-03, Vol.11 (3), p.758

2023

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PoolParty2: An integrated pipeline for analysing pooled or indexed low-coverage whole-genome sequencing data to discover the genetic basis of diversity

Molecular ecology resources, 2023-11

2023

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Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

Molecular ecology resources, 2017-05, Vol.17 (3), p.362-365

2017

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Neutral processes and taxonomic scale drive beta species‐genetic diversity correlations in a submesophotic tropical reef fish

Molecular ecology, 2024-07, Vol.33 (13), p.e17423-n/a

2024

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Whole genome resequencing identifies local adaptation associated with environmental variation for redband trout

Molecular ecology, 2023-02, Vol.32 (4), p.800-818

2023

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A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data

Molecular ecology resources, 2018-11, Vol.18 (6), p.1263-1281

2018

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The role of neutral and adaptive genomic variation in population diversification and speciation in two ground squirrel species of conservation concern

Molecular ecology, 2021-10, Vol.30 (19), p.4673-4694

2021

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Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research

Molecular ecology resources, 2020-11, Vol.20 (6), p.1458-1469

2020

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Harnessing the power of RADseq for ecological and evolutionary genomics

Comparative phylogeography of the ocean planet

Phylogenomics of the genus Tursiops and closely related Delphininae reveals extensive reticulation among lineages and provides inference about eco-evolutionary drivers

Genomic surveillance identifies potential risk factors for SARS-CoV-2 transmission at a mid-sized university in a small rural town

Author Correction: Genomic surveillance identifies potential risk factors for SARS-CoV-2 transmission at a mid-sized university in a small rural town

Multilocus evidence for globally distributed cryptic species and distinct populations across ocean gyres in a mesopelagic copepod

ezRAD: a simplified method for genomic genotyping in non-model organisms

A new mouse SNP genotyping assay for speed congenics: combining flexibility, affordability, and power

Diet of a rare herbivore based on DNA metabarcoding of feces: Selection, seasonality, and survival

Genomic Methods Take the Plunge: Recent Advances in High-Throughput Sequencing of Marine Mammals

Recent novel approaches for population genomics data analysis

Microsatellites for next-generation ecologists: a post-sequencing bioinformatics pipeline

Temporal Stability of Genetic Structure in a Mesopelagic Copepod

Long‐lived marine species may be resilient to environmental variability through a temporal portfolio effect

Phylogeographic analyses of submesophotic snappers Etelis coruscans and Etelis "marshi" (family Lutjanidae) reveal concordant genetic structure across the Hawaiian Archipelago

Genomic association with pathogen carriage in bighorn sheep (Ovis canadensis)

Rolling stones and stable homes: social structure, habitat diversity and population genetics of the Hawaiian spinner dolphin (Stenella longirostris)

High-Resolution Taxonomic Characterization Reveals Novel Human Microbial Strains with Potential as Risk Factors and Probiotics for Prediabetes and Type 2 Diabetes

PoolParty2: An integrated pipeline for analysing pooled or indexed low-coverage whole-genome sequencing data to discover the genetic basis of diversity

Unbroken: RADseq remains a powerful tool for understanding the genetics of adaptation in natural populations

Neutral processes and taxonomic scale drive beta species‐genetic diversity correlations in a submesophotic tropical reef fish

Whole genome resequencing identifies local adaptation associated with environmental variation for redband trout

A bioinformatic pipeline for identifying informative SNP panels for parentage assignment from RADseq data

The role of neutral and adaptive genomic variation in population diversification and speciation in two ground squirrel species of conservation concern

Building a global genomics observatory: Using GEOME (the Genomic Observatories Metadatabase) to expedite and improve deposition and retrieval of genetic data and metadata for biodiversity research

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