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Reconstructing organisms in silico: genome-scale models and their emerging applications

Nature reviews. Microbiology, 2020-12, Vol.18 (12), p.731-743

2020

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Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations

Environmental microbiology, 2017-01, Vol.19 (1), p.95-105

2017

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Gut microbiome heritability is nearly universal but environmentally contingent

Science (American Association for the Advancement of Science), 2021-07, Vol.373 (6551), p.181-186

2021

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Fungal networks shape dynamics of bacterial dispersal and community assembly in cheese rind microbiomes

Nature communications, 2018-01, Vol.9 (1), p.336-12, Article 336

2018

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Gut microbiota and BMI throughout childhood: the role of firmicutes, bacteroidetes, and short-chain fatty acid producers

Scientific reports, 2022-02, Vol.12 (1), p.3140-13, Article 3140

2022

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Restructuring of the Gut Microbiome by Intermittent Fasting Prevents Retinopathy and Prolongs Survival in db/db Mice

Diabetes (New York, N.Y.), 2018-09, Vol.67 (9), p.1867-1879

2018

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Gut microbiome alterations in Alzheimer's disease

Scientific reports, 2017-10, Vol.7 (1), p.13537-11, Article 13537

2017

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Probiotic Lactobacillus reuteri Prevents Postantibiotic Bone Loss by Reducing Intestinal Dysbiosis and Preventing Barrier Disruption

Journal of bone and mineral research, 2019-04, Vol.34 (4), p.681-698

2019

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Modulation of the human gut microbiota by dietary fibres occurs at the species level

BMC biology, 2016-01, Vol.14 (3), p.3-3, Article 3

2016

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The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos

Cell reports (Cambridge), 2016-02, Vol.14 (7), p.1655-1661

2016

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FBA Ecological Guild: Trio of Firmicutes-Bacteroidetes Alliance against Actinobacteria in Human Oral Microbiome

Scientific reports, 2020-01, Vol.10 (1), p.287-287, Article 287

2020

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Reshaping faecal gut microbiota composition by the intake of trans-resveratrol and quercetin in high-fat sucrose diet-fed rats

The Journal of nutritional biochemistry, 2015-06, Vol.26 (6), p.651-660

2015

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Shifts in Lachnospira and Clostridium sp. in the 3-month stool microbiome are associated with preschool age asthma

Clinical science (1979), 2016-12, Vol.130 (23), p.2199-2207

2016

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Oral supplementation of healthy adults with 2′-O-fucosyllactose and lacto-N-neotetraose is well tolerated and shifts the intestinal microbiota

British journal of nutrition, 2016-10, Vol.116 (8), p.1356-1368

2016

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Review article: dietary fibre–microbiota interactions

Alimentary pharmacology & therapeutics, 2015-07, Vol.42 (2), p.158-179

2015

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Normalization of Host Intestinal Mucus Layers Requires Long-Term Microbial Colonization

Cell host & microbe, 2015-11, Vol.18 (5), p.582-592

2015

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Red pitaya betacyanins protects from diet-induced obesity, liver steatosis and insulin resistance in association with modulation of gut microbiota in mice

Journal of gastroenterology and hepatology, 2016-08, Vol.31 (8), p.1462-1469

2016

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Multifunctional Cellulolytic Enzymes Outperform Processive Fungal Cellulases for Coproduction of Nanocellulose and Biofuels

ACS nano, 2017-03, Vol.11 (3), p.3101-3109

2017

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Contributions of the Interaction Between Dietary Protein and Gut Microbiota to Intestinal Health

Current protein & peptide science, 2017-08, Vol.18 (8), p.795

2017

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Host adaptation in gut Firmicutes is associated with sporulation loss and altered transmission cycle

Genome Biology, 2021-08, Vol.22 (1), p.204-204, Article 204

2021

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Changes in the soil microbial community after reductive soil disinfestation and cucumber seedling cultivation

Applied microbiology and biotechnology, 2016-06, Vol.100 (12), p.5581-5593

2016

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Photosynthetic biohybrid coculture for tandem and tunable CO 2 and N 2 fixation

Proceedings of the National Academy of Sciences - PNAS, 2022-06, Vol.119 (26), p.e2122364119

2022

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Consistent responses of soil microbial taxonomic and functional attributes to mercury pollution across China

Microbiome, 2018-10, Vol.6 (1), p.183-183, Article 183

2018

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Proteolytic bacterial dominance in a full-scale municipal solid waste anaerobic reactor assessed by 454 pyrosequencing technology

Chemosphere (Oxford), 2016-03, Vol.146, p.519-525

2016

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Microbiota, metabolome, and immune alterations in obese mice fed a high‐fat diet containing type 2 resistant starch

Molecular nutrition & food research, 2017-11, Vol.61 (11), p.n/a

2017

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Reconstructing organisms in silico: genome-scale models and their emerging applications

Pediatric obesity is associated with an altered gut microbiota and discordant shifts in Firmicutes populations

Gut microbiome heritability is nearly universal but environmentally contingent

Fungal networks shape dynamics of bacterial dispersal and community assembly in cheese rind microbiomes

Gut microbiota and BMI throughout childhood: the role of firmicutes, bacteroidetes, and short-chain fatty acid producers

Restructuring of the Gut Microbiome by Intermittent Fasting Prevents Retinopathy and Prolongs Survival in db/db Mice

Gut microbiome alterations in Alzheimer's disease

Probiotic Lactobacillus reuteri Prevents Postantibiotic Bone Loss by Reducing Intestinal Dysbiosis and Preventing Barrier Disruption

Modulation of the human gut microbiota by dietary fibres occurs at the species level

The Gut Microbiota Modulates Energy Metabolism in the Hibernating Brown Bear Ursus arctos

FBA Ecological Guild: Trio of Firmicutes-Bacteroidetes Alliance against Actinobacteria in Human Oral Microbiome

Reshaping faecal gut microbiota composition by the intake of trans-resveratrol and quercetin in high-fat sucrose diet-fed rats

Shifts in Lachnospira and Clostridium sp. in the 3-month stool microbiome are associated with preschool age asthma

Oral supplementation of healthy adults with 2′-O-fucosyllactose and lacto-N-neotetraose is well tolerated and shifts the intestinal microbiota

Review article: dietary fibre–microbiota interactions

Normalization of Host Intestinal Mucus Layers Requires Long-Term Microbial Colonization

Red pitaya betacyanins protects from diet-induced obesity, liver steatosis and insulin resistance in association with modulation of gut microbiota in mice

Multifunctional Cellulolytic Enzymes Outperform Processive Fungal Cellulases for Coproduction of Nanocellulose and Biofuels

Contributions of the Interaction Between Dietary Protein and Gut Microbiota to Intestinal Health

Host adaptation in gut Firmicutes is associated with sporulation loss and altered transmission cycle

Changes in the soil microbial community after reductive soil disinfestation and cucumber seedling cultivation

Photosynthetic biohybrid coculture for tandem and tunable CO 2 and N 2 fixation

Consistent responses of soil microbial taxonomic and functional attributes to mercury pollution across China

Proteolytic bacterial dominance in a full-scale municipal solid waste anaerobic reactor assessed by 454 pyrosequencing technology

Microbiota, metabolome, and immune alterations in obese mice fed a high‐fat diet containing type 2 resistant starch

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