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Using NSGA-III for optimising biomedical ontology alignment

CAAI Transactions on Intelligence Technology, 2019-09, Vol.4 (3), p.135-141

2019

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Interpretable ontology meta-matching in the biomedical domain using Mamdani fuzzy inference

Expert systems with applications, 2022-02, Vol.188, p.116025, Article 116025

2022

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Owlready: Ontology-oriented programming in Python with automatic classification and high level constructs for biomedical ontologies

Artificial intelligence in medicine, 2017-07, Vol.80, p.11-28

Lamy, Jean-Baptiste

2017

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Matching large-scale biomedical ontologies with central concept based partitioning algorithm and Adaptive Compact Evolutionary Algorithm

Applied soft computing, 2021-07, Vol.106, p.107343, Article 107343

2021

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InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk

BMC genomics, 2018-01, Vol.19 (Suppl 1), p.919-919, Article 919

2018

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ICD-10 - ORPHA: An Interactive Complex Network Model for Brazilian Rare Diseases

Procedia computer science, 2024, Vol.239, p.634-642

2024

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Matching biomedical ontologies through Compact Differential Evolution algorithm with compact adaption schemes on control parameters

Neurocomputing (Amsterdam), 2021-10, Vol.458, p.526-534

2021

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CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature

Journal of molecular biology, 2022-06, Vol.434 (11), p.167568-167568, Article 167568

2022

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Construction and exploitation of an historical knowledge graph to deal with the evolution of ontologies

Knowledge-based systems, 2020-04, Vol.194, p.105508, Article 105508

2020

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Wikidata: A large-scale collaborative ontological medical database

Journal of biomedical informatics, 2019-11, Vol.99, p.103292-103292, Article 103292

2019

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Assessing the practice of biomedical ontology evaluation: Gaps and opportunities

Journal of biomedical informatics, 2018-04, Vol.80, p.1-13

2018

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Alignment of Biomedical Ontologies Using Life Science Literature

KDLL: International Workshop on Knowledge Discovery in Life Science LIterature Knowledge Discovery in Life Science Literature PAKDD 2006 International Workshop, KDLL 2006, Singapore, April 9, 2006. Proceedings, 2006, p.1-17

2006

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A compact firefly algorithm for matching biomedical ontologies

Knowledge and information systems, 2020-07, Vol.62 (7), p.2855-2871

Xue, Xingsi

2020

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NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

Journal of biomedical semantics, 2017-06, Vol.8 (1), p.21-21, Article 21

2017

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Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching

Lecture notes in computer science, 2022, p.575-591

2022

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Evaluation of research in biomedical ontologies

Briefings in bioinformatics, 2013-11, Vol.14 (6), p.696-712

2013

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Matching Biomedical Ontologies via a Hybrid Graph Attention Network

Frontiers in genetics, 2022-07, Vol.13, p.893409-893409

2022

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Experiences from the anatomy track in the ontology alignment evaluation initiative

Journal of biomedical semantics, 2017-12, Vol.8 (1), p.56-56, Article 56

2017

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Tackling the challenges of matching biomedical ontologies

Journal of biomedical semantics, 2018-01, Vol.9 (1), p.4-4, Article 4

2018

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Supporting biomedical ontology evolution by identifying outdated concepts and the required type of change

Journal of biomedical informatics, 2018-11, Vol.87, p.1-11

2018

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Multi-Ontology Refined Embeddings (MORE): A hybrid multi-ontology and corpus-based semantic representation model for biomedical concepts

Journal of biomedical informatics, 2020-11, Vol.111, p.103581-103581, Article 103581

2020

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Identifying Clinical Terms in Medical Text Using Ontology-Guided Machine Learning

JMIR medical informatics, 2019-05, Vol.7 (2), p.e12596-e12596

2019

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Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

Journal of biomedical semantics, 2017-12, Vol.8 (1), p.55-55, Article 55

2017

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A network-theoretic approach for decompositional translation across Open Biological Ontologies

Journal of biomedical informatics, 2010-08, Vol.43 (4), p.608-612

2010

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Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT

Journal of the American Medical Informatics Association : JAMIA, 2015-05, Vol.22 (3), p.640-648

2015

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Using NSGA-III for optimising biomedical ontology alignment

Interpretable ontology meta-matching in the biomedical domain using Mamdani fuzzy inference

Owlready: Ontology-oriented programming in Python with automatic classification and high level constructs for biomedical ontologies

Matching large-scale biomedical ontologies with central concept based partitioning algorithm and Adaptive Compact Evolutionary Algorithm

InfAcrOnt: calculating cross-ontology term similarities using information flow by a random walk

ICD-10 - ORPHA: An Interactive Complex Network Model for Brazilian Rare Diseases

Matching biomedical ontologies through Compact Differential Evolution algorithm with compact adaption schemes on control parameters

CoMent: Relationships Between Biomedical Concepts Inferred From the Scientific Literature

Construction and exploitation of an historical knowledge graph to deal with the evolution of ontologies

Wikidata: A large-scale collaborative ontological medical database

Assessing the practice of biomedical ontology evaluation: Gaps and opportunities

Alignment of Biomedical Ontologies Using Life Science Literature

A compact firefly algorithm for matching biomedical ontologies

NCBO Ontology Recommender 2.0: an enhanced approach for biomedical ontology recommendation

Machine Learning-Friendly Biomedical Datasets for Equivalence and Subsumption Ontology Matching

Evaluation of research in biomedical ontologies

Matching Biomedical Ontologies via a Hybrid Graph Attention Network

Experiences from the anatomy track in the ontology alignment evaluation initiative

Tackling the challenges of matching biomedical ontologies

Supporting biomedical ontology evolution by identifying outdated concepts and the required type of change

Multi-Ontology Refined Embeddings (MORE): A hybrid multi-ontology and corpus-based semantic representation model for biomedical concepts

Identifying Clinical Terms in Medical Text Using Ontology-Guided Machine Learning

Matching disease and phenotype ontologies in the ontology alignment evaluation initiative

A network-theoretic approach for decompositional translation across Open Biological Ontologies

Using the wisdom of the crowds to find critical errors in biomedical ontologies: a study of SNOMED CT

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