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Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel

Cell, 2013-08, Vol.154 (4), p.914-927

2013

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Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency

Nature communications, 2019-04, Vol.10 (1), p.1598-14, Article 1598

2019

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Prolonged Ezh2 Depletion in Glioblastoma Causes a Robust Switch in Cell Fate Resulting in Tumor Progression

Cell reports (Cambridge), 2015-01, Vol.10 (3), p.383-397

2015

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Deep learning for clustering of multivariate clinical patient trajectories with missing values

Gigascience, 2019-11, Vol.8 (11)

2019

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Chromatin landscapes of retroviral and transposon integration profiles

PLoS genetics, 2014-04, Vol.10 (4), p.e1004250

2014

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Transposon mutagenesis identifies genes driving hepatocellular carcinoma in a chronic hepatitis B mouse model

Nature genetics, 2014-01, Vol.46 (1), p.24-32

2014

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An Explainable Multimodal Neural Network Architecture for Predicting Epilepsy Comorbidities Based on Administrative Claims Data

Frontiers in artificial intelligence, 2021-05, Vol.4, p.610197-610197

2021

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Using TRIP for genome-wide position effect analysis in cultured cells

Nature protocols, 2014-06, Vol.9 (6), p.1255-1281

2014

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A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut

PloS one, 2014-07, Vol.9 (7), p.e103341

2014

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The small FOXP1 isoform predominantly expressed in activated B cell-like diffuse large B-cell lymphoma and full-length FOXP1 exert similar oncogenic and transcriptional activity in human B cells

Haematologica (Roma), 2017-03, Vol.102 (3), p.573-583

2017

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Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development

BMC systems biology, 2015-09, Vol.9 (1), p.63, Article 63

2015

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Towards realizing the vision of precision medicine: AI based prediction of clinical drug response

Brain (London, England : 1878), 2021-07, Vol.144 (6), p.1738-1750

2021

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Chemical profiling of the genome with anti-cancer drugs defines target specificities

Nature chemical biology, 2015-07, Vol.11 (7), p.472-480

2015

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3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes

Nature communications, 2015-02, Vol.6 (1), p.6381, Article 6381

2015

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Dosage-dependent tumor suppression by histone deacetylases 1 and 2 through regulation of c-Myc collaborating genes and p53 function

Blood, 2013-03, Vol.121 (11), p.2038-2050

2013

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A cell-based model of Nematostella vectensis gastrulation including bottle cell formation, invagination and zippering

Developmental biology, 2011-03, Vol.351 (1), p.217-228

2011

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Predicting seizure recurrence after an initial seizure-like episode from routine clinical notes using large language models: a retrospective cohort study

The Lancet. Digital health, 2023-12, Vol.5 (12), p.e882-e894

2023

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TRIP through the chromatin: A high throughput exploration of enhancer regulatory landscapes

Genomics (San Diego, Calif.), 2015-09, Vol.106 (3), p.171-177

2015

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Corrigendum: using TRIP for genome-wide position effect analysis in cultured cells

Nature protocols, 2015-04, Vol.10 (4), p.643-643

2015

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Erratum: Corrigendum: Using TRIP for genome-wide position effect analysis in cultured cells

Nature protocols, 2015-03, Vol.10 (4), p.644-644

2015

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Correction: Corrigendum: Using TRIP for genome-wide position effect analysis in cultured cells

Nature protocols, 2015, Vol.10 (4), p.644-644

2015

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Chromatin Landscapes of Retroviral and Transposon Integration Profiles: e1004250

PLoS genetics, 2014-04, Vol.10 (4)

2014

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Computational identification of insertional mutagenesis targets for cancer gene discovery

Nucleic acids research, 2011-08, Vol.39 (15), p.e105-e105

2011

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Applications of DNA integrating elements: Facing the bias bully

Mobile genetic elements, 2014-11, Vol.4 (6), p.1-6

2014

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A Computational Approach towards a Gene Regulatory Network for the Developing Nematostella vectensis Gut: e103341

PloS one, 2014-07, Vol.9 (7)

2014

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Chromatin Position Effects Assayed by Thousands of Reporters Integrated in Parallel

Multiplexed Cas9 targeting reveals genomic location effects and gRNA-based staggered breaks influencing mutation efficiency

Prolonged Ezh2 Depletion in Glioblastoma Causes a Robust Switch in Cell Fate Resulting in Tumor Progression

Deep learning for clustering of multivariate clinical patient trajectories with missing values

Chromatin landscapes of retroviral and transposon integration profiles

Transposon mutagenesis identifies genes driving hepatocellular carcinoma in a chronic hepatitis B mouse model

An Explainable Multimodal Neural Network Architecture for Predicting Epilepsy Comorbidities Based on Administrative Claims Data

Using TRIP for genome-wide position effect analysis in cultured cells

A computational approach towards a gene regulatory network for the developing Nematostella vectensis gut

The small FOXP1 isoform predominantly expressed in activated B cell-like diffuse large B-cell lymphoma and full-length FOXP1 exert similar oncogenic and transcriptional activity in human B cells

Analysis of a spatial gene expression database for sea anemone Nematostella vectensis during early development

Towards realizing the vision of precision medicine: AI based prediction of clinical drug response

Chemical profiling of the genome with anti-cancer drugs defines target specificities

3D hotspots of recurrent retroviral insertions reveal long-range interactions with cancer genes

Dosage-dependent tumor suppression by histone deacetylases 1 and 2 through regulation of c-Myc collaborating genes and p53 function

A cell-based model of Nematostella vectensis gastrulation including bottle cell formation, invagination and zippering

Predicting seizure recurrence after an initial seizure-like episode from routine clinical notes using large language models: a retrospective cohort study

TRIP through the chromatin: A high throughput exploration of enhancer regulatory landscapes

Corrigendum: using TRIP for genome-wide position effect analysis in cultured cells

Erratum: Corrigendum: Using TRIP for genome-wide position effect analysis in cultured cells

Correction: Corrigendum: Using TRIP for genome-wide position effect analysis in cultured cells

Chromatin Landscapes of Retroviral and Transposon Integration Profiles: e1004250

Computational identification of insertional mutagenesis targets for cancer gene discovery

Applications of DNA integrating elements: Facing the bias bully

A Computational Approach towards a Gene Regulatory Network for the Developing Nematostella vectensis Gut: e103341

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