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Growth Rate-Dependent Global Effects on Gene Expression in Bacteria

Cell, 2009-12, Vol.139 (7), p.1366-1375

2009

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Overflow metabolism in Escherichia coli results from efficient proteome allocation

Nature (London), 2015-12, Vol.528 (7580), p.99-104

2015

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Interdependence of Cell Growth and Gene Expression: Origins and Consequences

Science (American Association for the Advancement of Science), 2010-11, Vol.330 (6007), p.1099-1102

2010

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Quantitative characteristics of gene regulation by small RNA

PLoS biology, 2007-09, Vol.5 (9), p.e229-e229

2007

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Insertion Sequence (IS) Element-Mediated Activating Mutations of the Cryptic Aromatic β-Glucoside Utilization ( BglGFB ) Operon Are Promoted by the Anti-Terminator Protein (BglG) in Escherichia coli

International journal of molecular sciences, 2022-01, Vol.23 (3), p.1505

2022

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Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel

Proceedings of the National Academy of Sciences - PNAS, 2016-10, Vol.113 (41), p.11414-11419

2016

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From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

Molecular systems biology, 2021-05, Vol.17 (5), p.1-23

2021

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A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli

Scientific reports, 2022-05, Vol.12 (1), p.7274-7274, Article 7274

2022

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Effects of Global and Specific DNA-Binding Proteins on Transcriptional Regulation of the E. coli bgl Operon

International journal of molecular sciences, 2022-09, Vol.23 (18), p.10343

2022

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Comprehensive Characterization of fucAO Operon Activation in Escherichia coli

International journal of molecular sciences, 2024-04, Vol.25 (7), p.3946

2024

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Protein:Protein interactions in the cytoplasmic membrane apparently influencing sugar transport and phosphorylation activities of the e. coli phosphotransferase system

PloS one, 2019-11, Vol.14 (11), p.e0219332-e0219332

2019

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The effect of DNA-binding proteins on insertion sequence element transposition upstream of the bgl operon in Escherichia coli

Frontiers in microbiology, 2024-04, Vol.15, p.1388522-1388522

2024

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E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding

Scientific reports, 2023-05, Vol.13 (1), p.7345-7345, Article 7345

2023

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Combinatorial transcriptional control of the lactose operon of Escherichia coli

Proceedings of the National Academy of Sciences - PNAS, 2007-04, Vol.104 (14), p.6043-6048

2007

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Transposon-mediated activation of the Escherichia coli glpFK operon is inhibited by specific DNA-binding proteins: Implications for stress-induced transposition events

Mutation research, 2016-11, Vol.793-794, p.22-31

2016

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Histone-like nucleoid structuring (H-NS) protein silences the beta-glucoside (bgl) utilization operon in Escherichia coli by forming a DNA loop

Computational and structural biotechnology journal, 2022-01, Vol.20, p.6287-6301

2022

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Quantifying the sequence-function relation in gene silencing by bacterial small RNAs

Proceedings of the National Academy of Sciences - PNAS, 2011-07, Vol.108 (30), p.12473-12478

2011

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Hopping into a hot seat: Role of DNA structural features on IS5-mediated gene activation and inactivation under stress

PloS one, 2017-06, Vol.12 (6), p.e0180156-e0180156

2017

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A novel mechanism of transposon-mediated gene activation

PLoS genetics, 2009-10, Vol.5 (10), p.e1000689-e1000689

2009

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Transcriptome Analysis of Crp-Dependent Catabolite Control of Gene Expression in Escherichia coli

Journal of Bacteriology, 2004-06, Vol.186 (11), p.3516-3524

2004

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mechanism of transposon-mediated directed mutation

Molecular microbiology, 2009-10, Vol.74 (1), p.29-43

2009

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Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria

Science (American Association for the Advancement of Science), 2022-12, Vol.378 (6624), p.eabk2066-eabk2066

2022

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Functional Interactions between the Carbon and Iron Utilization Regulators, Crp and Fur, in Escherichia coli

Journal of Bacteriology, 2005-02, Vol.187 (3), p.980-990

2005

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Cellular perception of growth rate and the mechanistic origin of bacterial growth law

Proceedings of the National Academy of Sciences - PNAS, 2022-05, Vol.119 (20), p.e2201585119

2022

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Precise Excision of IS5 from the Intergenic Region between the fucPIK and the fucAO Operons and Mutational Control of fucPIK Operon Expression in Escherichia coli

Journal of Bacteriology, 2010-04, Vol.192 (7), p.2013-2019

2010

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Growth Rate-Dependent Global Effects on Gene Expression in Bacteria

Overflow metabolism in Escherichia coli results from efficient proteome allocation

Interdependence of Cell Growth and Gene Expression: Origins and Consequences

Quantitative characteristics of gene regulation by small RNA

Insertion Sequence (IS) Element-Mediated Activating Mutations of the Cryptic Aromatic β-Glucoside Utilization ( BglGFB ) Operon Are Promoted by the Anti-Terminator Protein (BglG) in Escherichia coli

Effect of flow and peristaltic mixing on bacterial growth in a gut-like channel

From coarse to fine: the absolute Escherichia coli proteome under diverse growth conditions

A systems approach discovers the role and characteristics of seven LysR type transcription factors in Escherichia coli

Effects of Global and Specific DNA-Binding Proteins on Transcriptional Regulation of the E. coli bgl Operon

Comprehensive Characterization of fucAO Operon Activation in Escherichia coli

Protein:Protein interactions in the cytoplasmic membrane apparently influencing sugar transport and phosphorylation activities of the e. coli phosphotransferase system

The effect of DNA-binding proteins on insertion sequence element transposition upstream of the bgl operon in Escherichia coli

E. coli allantoinase is activated by the downstream metabolic enzyme, glycerate kinase, and stabilizes the putative allantoin transporter by direct binding

Combinatorial transcriptional control of the lactose operon of Escherichia coli

Transposon-mediated activation of the Escherichia coli glpFK operon is inhibited by specific DNA-binding proteins: Implications for stress-induced transposition events

Histone-like nucleoid structuring (H-NS) protein silences the beta-glucoside (bgl) utilization operon in Escherichia coli by forming a DNA loop

Quantifying the sequence-function relation in gene silencing by bacterial small RNAs

Hopping into a hot seat: Role of DNA structural features on IS5-mediated gene activation and inactivation under stress

A novel mechanism of transposon-mediated gene activation

Transcriptome Analysis of Crp-Dependent Catabolite Control of Gene Expression in Escherichia coli

mechanism of transposon-mediated directed mutation

Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria

Functional Interactions between the Carbon and Iron Utilization Regulators, Crp and Fur, in Escherichia coli

Cellular perception of growth rate and the mechanistic origin of bacterial growth law

Precise Excision of IS5 from the Intergenic Region between the fucPIK and the fucAO Operons and Mutational Control of fucPIK Operon Expression in Escherichia coli

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