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Generating normal networks via leaf insertion and nearest neighbor interchange

BMC bioinformatics, 2019-12, Vol.20 (Suppl 20), p.642-642, Article 642

Zhang, Louxin

2019

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Improved anticancer drug response prediction in cell lines using matrix factorization with similarity regularization

BMC cancer, 2017-08, Vol.17 (1), p.513-513, Article 513

2017

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Evidence for transmission of COVID-19 prior to symptom onset

eLife, 2020-06, Vol.9

2020

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How much can deep learning improve prediction of the responses to drugs in cancer cell lines?

Briefings in bioinformatics, 2022-01, Vol.23 (1)

2022

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From Gene Trees to Species Trees II: Species Tree Inference by Minimizing Deep Coalescence Events

IEEE/ACM transactions on computational biology and bioinformatics, 2011-11, Vol.8 (6), p.1685-1691

Zhang, Louxin

2011

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ZDOG: zooming in on dominating genes with mutations in cancer pathways

BMC bioinformatics, 2019-12, Vol.20 (1), p.740-740, Article 740

2019

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On Tree-Based Phylogenetic Networks

Journal of computational biology, 2016-07, Vol.23 (7), p.553-565

Zhang, Louxin

2016

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The Bourque distances for mutation trees of cancers

Algorithms for molecular biology, 2021-06, Vol.16 (1), p.1-9, Article 9

2021

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A survey and systematic assessment of computational methods for drug response prediction

Briefings in bioinformatics, 2021-01, Vol.22 (1), p.232-246

2021

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Hi-GeoMVP: a hierarchical geometry-enhanced deep learning model for drug response prediction

Bioinformatics (Oxford, England), 2024-03, Vol.40 (4)

2024

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Stage-specific protein-domain mutational profile of invasive ductal breast cancer

BMC medical genomics, 2020-10, Vol.13 (Suppl 10), p.150-150, Article 150

2020

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Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree

BMC bioinformatics, 2011-10, Vol.12 Suppl 9 (S9), p.S7-S7, Article S7

2011

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Reconstructing contiguous regions of an ancestral genome

Genome Research, 2006-12, Vol.16 (12), p.1557-1565

2006

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Computing the Bounds of the Number of Reticulations in a Tree-Child Network That Displays a Set of Trees

Journal of computational biology, 2024-04, Vol.31 (4), p.345-359

2024

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The tree-child network inference problem for line trees and the shortest common supersequence problem for permutation strings

Journal of computer and system sciences, 2024-09, Vol.144, p.103546, Article 103546

2024

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Counting and enumerating tree-child networks and their subclasses

Journal of computer and system sciences, 2020-12, Vol.114, p.84-104

2020

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Introducing field-programmable gate arrays in genotype phasing and imputation

Bioinformatics advances, 2024, Vol.4 (1), p.vbae114

2024

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Evolution and subfamilies of HERVL human endogenous retrovirus

Bioinformatics advances, 2024, Vol.4 (1), p.vbae110

2024

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Effect of Incomplete Lineage Sorting On Tree-Reconciliation-Based Inference of Gene Duplication

IEEE/ACM transactions on computational biology and bioinformatics, 2014-05, Vol.11 (3), p.477-485

2014

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Superiority of Spaced Seeds for Homology Search

IEEE/ACM transactions on computational biology and bioinformatics, 2007-07, Vol.4 (3), p.496-505

Zhang, Louxin

2007

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Fitness Profiling Links Topoisomerase II Regulation of Centromeric Integrity to Doxorubicin Resistance in Fission Yeast

Scientific reports, 2015-02, Vol.5 (1), Article 8400

2015

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Predicting chemotherapeutic drug combinations through gene network profiling

Scientific reports, 2016-01, Vol.6 (1), p.18658-18658, Article 18658

2016

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The k -Robinson-Foulds Dissimilarity Measures for Comparison of Labeled Trees

Journal of computational biology, 2024-04, Vol.31 (4), p.328-344

2024

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Positive correlation between gene coexpression and positional clustering in the zebrafish genome

BMC genomics, 2009-01, Vol.10 (1), p.42-42, Article 42

2009

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A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon strings

Genome research, 2023-07

2023

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Generating normal networks via leaf insertion and nearest neighbor interchange

Improved anticancer drug response prediction in cell lines using matrix factorization with similarity regularization

Evidence for transmission of COVID-19 prior to symptom onset

How much can deep learning improve prediction of the responses to drugs in cancer cell lines?

From Gene Trees to Species Trees II: Species Tree Inference by Minimizing Deep Coalescence Events

ZDOG: zooming in on dominating genes with mutations in cancer pathways

On Tree-Based Phylogenetic Networks

The Bourque distances for mutation trees of cancers

A survey and systematic assessment of computational methods for drug response prediction

Hi-GeoMVP: a hierarchical geometry-enhanced deep learning model for drug response prediction

Stage-specific protein-domain mutational profile of invasive ductal breast cancer

Structural properties of the reconciliation space and their applications in enumerating nearly-optimal reconciliations between a gene tree and a species tree

Reconstructing contiguous regions of an ancestral genome

Computing the Bounds of the Number of Reticulations in a Tree-Child Network That Displays a Set of Trees

The tree-child network inference problem for line trees and the shortest common supersequence problem for permutation strings

Counting and enumerating tree-child networks and their subclasses

Introducing field-programmable gate arrays in genotype phasing and imputation

Evolution and subfamilies of HERVL human endogenous retrovirus

Effect of Incomplete Lineage Sorting On Tree-Reconciliation-Based Inference of Gene Duplication

Superiority of Spaced Seeds for Homology Search

Fitness Profiling Links Topoisomerase II Regulation of Centromeric Integrity to Doxorubicin Resistance in Fission Yeast

Predicting chemotherapeutic drug combinations through gene network profiling

The k -Robinson-Foulds Dissimilarity Measures for Comparison of Labeled Trees

Positive correlation between gene coexpression and positional clustering in the zebrafish genome

A fast and scalable method for inferring phylogenetic networks from trees by aligning lineage taxon strings

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