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Affordable Implementation of a Point-of-Care Ultrasound Program in a Large Tertiary Neonatal Intensive Care Unit to Assess Umbilical Venous Catheter Tips and Aid Central Placement

American journal of perinatology, 2024-07

2024

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More than a consult: integrating hemodynamics into neonatal care and research

Pediatric research, 2024-08

2024

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Neonatal cardiac POCUS—a survey of academic neonatal centers in the United States

Journal of perinatology, 2024-09, Vol.44 (10), p.1509-1514

2024

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A colon cancer “prequel”

Cell host & microbe, 2021-10, Vol.29 (10), p.1480-1481

2021

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Contemporary Perspectives on the Patent Ductus Arteriosus in Preterm Neonates: A Hemodynamics-Driven Approach

Current treatment options in pediatrics, 2024, Vol.10 (3), p.147-165

2024

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Residence of Streptococcus pneumoniae and Moraxella catarrhalis within polymicrobial biofilm promotes antibiotic resistance and bacterial persistence in vivo

Pathogens and disease, 2014-04, Vol.70 (3), p.280-288

2014

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Pneumococcal Neuraminidase A (NanA) Promotes Biofilm Formation and Synergizes with Influenza A Virus in Nasal Colonization and Middle Ear Infection

Infection and immunity, 2017-04, Vol.85 (4)

2017

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Coinfection with Streptococcus pneumoniae negatively modulates the size and composition of the ongoing influenza-specific CD8⁺ T cell response

The Journal of immunology (1950), 2014-11, Vol.193 (10), p.5076-5087

2014

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Influenza A virus alters pneumococcal nasal colonization and middle ear infection independently of phase variation

Infection and immunity, 2014-11, Vol.82 (11), p.4802-4812

2014

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Interactions between influenza a virus and Streptococcus pneumoniae in nasal colonization and middle ear infection

Wren, John T

2015

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LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis

Bioinformatics (Oxford, England), 2017-01, Vol.33 (2), p.272-279

2017

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Transfer learning for biomedical named entity recognition with neural networks

Bioinformatics, 2018-12, Vol.34 (23), p.4087-4094

2018

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Towards reliable named entity recognition in the biomedical domain

Bioinformatics, 2020-01, Vol.36 (1), p.280-286

2020

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Exosomal lncRNAs and cancer: connecting the missing links

Bioinformatics, 2019-01, Vol.35 (2), p.352-360

2019

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MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11)

2023

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Pathformer: a biological pathway informed transformer for disease diagnosis and prognosis using multi-omics data

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5)

2024

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PubMed Computed Authors in 2024: an open resource of disambiguated author names in biomedical literature

Bioinformatics (Oxford, England), 2024-11

2024

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Tutorial on survival modeling with applications to omics data

Bioinformatics (Oxford, England), 2024-03, Vol.40 (3)

2024

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SurvBal: compositional microbiome balances for survival outcomes

Bioinformatics (Oxford, England), 2024-10, Vol.40 (10)

2024

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Best practices to evaluate the impact of biomedical research software—metric collection beyond citations

Bioinformatics (Oxford, England), 2024-08, Vol.40 (8)

2024

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STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs

Bioinformatics, 2022-03, Vol.38 (6), p.1648-1656

2022

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Improving confidence in lipidomic annotations by incorporating empirical ion mobility regression analysis and chemical class prediction

Bioinformatics, 2022-05, Vol.38 (10), p.2872-2879

2022

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GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis

Bioinformatics, 2020-01, Vol.36 (1), p.257-263

2020

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MecCog: a knowledge representation framework for genetic disease mechanism

Bioinformatics (Oxford, England), 2021-11, Vol.37 (22), p.4180-4186

2021

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Dug: a semantic search engine leveraging peer-reviewed knowledge to query biomedical data repositories

Bioinformatics, 2022-06, Vol.38 (12), p.3252-3258

2022

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Affordable Implementation of a Point-of-Care Ultrasound Program in a Large Tertiary Neonatal Intensive Care Unit to Assess Umbilical Venous Catheter Tips and Aid Central Placement

More than a consult: integrating hemodynamics into neonatal care and research

Neonatal cardiac POCUS—a survey of academic neonatal centers in the United States

A colon cancer “prequel”

Contemporary Perspectives on the Patent Ductus Arteriosus in Preterm Neonates: A Hemodynamics-Driven Approach

Residence of Streptococcus pneumoniae and Moraxella catarrhalis within polymicrobial biofilm promotes antibiotic resistance and bacterial persistence in vivo

Pneumococcal Neuraminidase A (NanA) Promotes Biofilm Formation and Synergizes with Influenza A Virus in Nasal Colonization and Middle Ear Infection

Coinfection with Streptococcus pneumoniae negatively modulates the size and composition of the ongoing influenza-specific CD8⁺ T cell response

Influenza A virus alters pneumococcal nasal colonization and middle ear infection independently of phase variation

Interactions between influenza a virus and Streptococcus pneumoniae in nasal colonization and middle ear infection

LD Hub: a centralized database and web interface to perform LD score regression that maximizes the potential of summary level GWAS data for SNP heritability and genetic correlation analysis

Transfer learning for biomedical named entity recognition with neural networks

Towards reliable named entity recognition in the biomedical domain

Exosomal lncRNAs and cancer: connecting the missing links

MedCPT: Contrastive Pre-trained Transformers with large-scale PubMed search logs for zero-shot biomedical information retrieval

Pathformer: a biological pathway informed transformer for disease diagnosis and prognosis using multi-omics data

PubMed Computed Authors in 2024: an open resource of disambiguated author names in biomedical literature

Tutorial on survival modeling with applications to omics data

SurvBal: compositional microbiome balances for survival outcomes

Best practices to evaluate the impact of biomedical research software—metric collection beyond citations

STonKGs: a sophisticated transformer trained on biomedical text and knowledge graphs

Improving confidence in lipidomic annotations by incorporating empirical ion mobility regression analysis and chemical class prediction

GMSimpute: a generalized two-step Lasso approach to impute missing values in label-free mass spectrum analysis

MecCog: a knowledge representation framework for genetic disease mechanism

Dug: a semantic search engine leveraging peer-reviewed knowledge to query biomedical data repositories

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