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Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton

The ISME Journal, 2015-11, Vol.9 (11), p.2386-2399

2015

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High Variety of Known and New RNA and DNA Viruses of Diverse Origins in Untreated Sewage

Journal of Virology, 2012-11, Vol.86 (22), p.12161-12175

2012

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Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

PloS one, 2012-09, Vol.7 (9), p.e44224-e44224

2012

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Metagenomics: Read Length Matters

Applied and Environmental Microbiology, 2008-03, Vol.74 (5), p.1453-1463

2008

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Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory

Annual review of virology, 2017-09, Vol.4 (1), p.201-219

2017

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A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes

The ISME Journal, 2015-06, Vol.9 (6), p.1352-1364

2015

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Abundance and Distribution of Synechococcus spp. and Cyanophages in the Chesapeake Bay

Applied and Environmental Microbiology, 2011-11, Vol.77 (21), p.7459-7468

2011

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Iroki: automatic customization and visualization of phylogenetic trees

PeerJ (San Francisco, CA), 2020-02, Vol.8, p.e8584-e8584, Article e8584

2020

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Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

Proceedings of the National Academy of Sciences - PNAS, 2013-06, Vol.110 (26), p.10800-10805

2013

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Evaluation of a Transposase Protocol for Rapid Generation of Shotgun High-Throughput Sequencing Libraries from Nanogram Quantities of DNA

Applied and Environmental Microbiology, 2011-11, Vol.77 (22), p.8071-8079

2011

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Impacts of poultry house environment on poultry litter bacterial community composition

PloS one, 2011-09, Vol.6 (9), p.e24785-e24785

2011

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Improvements in viral gene annotation using large language models and soft alignments

BMC bioinformatics, 2024-04, Vol.25 (1), p.165-165, Article 165

2024

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Towards an integrative view of virus phenotypes

Nature reviews. Microbiology, 2022-02, Vol.20 (2), p.83-94

2022

Volltextzugriff (PDF)

Metagenomic Characterization of Chesapeake Bay Virioplankton

Applied and Environmental Microbiology, 2007-12, Vol.73 (23), p.7629-7641

2007

Volltextzugriff (PDF)

Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems

Scientific reports, 2021-01, Vol.11 (1), p.1629-1629, Article 1629

2021

Volltextzugriff (PDF)

Temporal Dynamics of Soil Virus and Bacterial Populations in Agricultural and Early Plant Successional Soils

Frontiers in microbiology, 2020-07, Vol.11, p.1494-1494

2020

Volltextzugriff (PDF)

Virioplankton: Viruses in Aquatic Ecosystems

Microbiology and Molecular Biology Reviews, 2000-03, Vol.64 (1), p.69-114

2000

Volltextzugriff (PDF)

Coordination of SARS-CoV-2 wastewater and clinical testing of university students demonstrates the importance of sampling duration and collection time

The Science of the total environment, 2022-07, Vol.830, p.154619-154619, Article 154619

2022

Volltextzugriff (PDF)

Assembly of Viral Metagenomes from Yellowstone Hot Springs

Applied and Environmental Microbiology, 2008-07, Vol.74 (13), p.4164-4174

2008

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Phages across the biosphere: contrasts of viruses in soil and aquatic environments

Research in microbiology, 2008-06, Vol.159 (5), p.349-357

2008

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Abundance and Diversity of Viruses in Six Delaware Soils

Applied and Environmental Microbiology, 2005-06, Vol.71 (6), p.3119-3125

2005

Volltextzugriff (PDF)

Re-examination of the relationship between marine virus and microbial cell abundances

Nature microbiology, 2016-01, Vol.1, p.15024

2016

Volltextzugriff (PDF)

Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology

The ISME Journal, 2017-11, Vol.11 (11), p.2479-2491

2017

Volltextzugriff (PDF)

Acyl-Homoserine Lactones Can Induce Virus Production in Lysogenic Bacteria: an Alternative Paradigm for Prophage Induction

Applied and Environmental Microbiology, 2009-11, Vol.75 (22), p.7142-7152

2009

Volltextzugriff (PDF)

Spontaneously Produced Lysogenic Phages Are an Important Component of the Soybean Bradyrhizobium Mobilome

mBio, 2023-04, Vol.14 (2), p.e0029523-e0029523

2023

Volltextzugriff (PDF)

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Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton

High Variety of Known and New RNA and DNA Viruses of Diverse Origins in Untreated Sewage

Groundtruthing next-gen sequencing for microbial ecology-biases and errors in community structure estimates from PCR amplicon pyrosequencing

Metagenomics: Read Length Matters

Viruses in Soil Ecosystems: An Unknown Quantity Within an Unexplored Territory

A multitrophic model to quantify the effects of marine viruses on microbial food webs and ecosystem processes

Abundance and Distribution of Synechococcus spp. and Cyanophages in the Chesapeake Bay

Iroki: automatic customization and visualization of phylogenetic trees

Genome of Phaeocystis globosa virus PgV-16T highlights the common ancestry of the largest known DNA viruses infecting eukaryotes

Evaluation of a Transposase Protocol for Rapid Generation of Shotgun High-Throughput Sequencing Libraries from Nanogram Quantities of DNA

Impacts of poultry house environment on poultry litter bacterial community composition

Improvements in viral gene annotation using large language models and soft alignments

Towards an integrative view of virus phenotypes

Metagenomic Characterization of Chesapeake Bay Virioplankton

Assessing the efficacy of eDNA metabarcoding for measuring microbial biodiversity within forest ecosystems

Temporal Dynamics of Soil Virus and Bacterial Populations in Agricultural and Early Plant Successional Soils

Virioplankton: Viruses in Aquatic Ecosystems

Coordination of SARS-CoV-2 wastewater and clinical testing of university students demonstrates the importance of sampling duration and collection time

Assembly of Viral Metagenomes from Yellowstone Hot Springs

Phages across the biosphere: contrasts of viruses in soil and aquatic environments

Abundance and Diversity of Viruses in Six Delaware Soils

Re-examination of the relationship between marine virus and microbial cell abundances

Novel chaperonins are prevalent in the virioplankton and demonstrate links to viral biology and ecology

Acyl-Homoserine Lactones Can Induce Virus Production in Lysogenic Bacteria: an Alternative Paradigm for Prophage Induction

Spontaneously Produced Lysogenic Phages Are an Important Component of the Soybean Bradyrhizobium Mobilome

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