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Quantitative Evaluation of Filter Aided Sample Preparation (FASP) and Multienzyme Digestion FASP Protocols

Analytical chemistry (Washington), 2016-05, Vol.88 (10), p.5438-5443

Wisniewski, Jacek R

2016

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Fast and Sensitive Total Protein and Peptide Assays for Proteomic Analysis

Analytical chemistry (Washington), 2015-04, Vol.87 (8), p.4110-4116

2015

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Quantitative Analysis of Human Red Blood Cell Proteome

Journal of proteome research, 2017-08, Vol.16 (8), p.2752-2761

2017

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A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards

Molecular & cellular proteomics, 2014-12, Vol.13 (12), p.3497-3506

2014

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Filter Aided Sample Preparation – A tutorial

Analytica chimica acta, 2019-12, Vol.1090, p.23-30

Wiśniewski, Jacek R.

2019

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Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling

Cell reports (Cambridge), 2014-09, Vol.8 (5), p.1583-1594

2014

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Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane Proteome

Journal of proteome research, 2009-12, Vol.8 (12), p.5674-5678

2009

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Mapping N-Glycosylation Sites across Seven Evolutionarily Distant Species Reveals a Divergent Substrate Proteome Despite a Common Core Machinery

Molecular cell, 2012-05, Vol.46 (4), p.542-548

2012

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Filter-Aided Sample Preparation for Proteome Analysis

Methods in molecular biology (Clifton, N.J.), 2018, Vol.1841, p.3

Wiśniewski, Jacek R

2018

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High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers

Journal of proteome research, 2011-07, Vol.10 (7), p.3040-3049

2011

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Comparative Proteomic Analysis of Human Liver Tissue and Isolated Hepatocytes with a Focus on Proteins Determining Drug Exposure

Journal of proteome research, 2015-08, Vol.14 (8), p.3305-3314

2015

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A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting

Journal of proteome research, 2016-07, Vol.15 (7), p.2321-2326

2016

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Proteasome machinery is instrumental in a common gain-of-function program of the p53 missense mutants in cancer

Nature cell biology, 2016-08, Vol.18 (8), p.897

2016

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Universal sample preparation method for proteome analysis

Nature methods, 2009-05, Vol.6 (5), p.359-362

2009

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Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints

Cell, 2010-05, Vol.141 (5), p.897-907

2010

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Multiple-Enzyme-Digestion Strategy Improves Accuracy and Sensitivity of Label- and Standard-Free Absolute Quantification to a Level That Is Achievable by Analysis with Stable Isotope-Labeled Standard Spiking

Journal of proteome research, 2019-01, Vol.18 (1), p.217-224, Article acs.jproteome.8b00549

2019

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Universal sample preparation method for proteome analysis

Nature methods, 2009-04, Vol.6 (5), p.359-362

2009

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In-depth quantitative analysis and comparison of the human hepatocyte and hepatoma cell line HepG2 proteomes

Journal of proteomics, 2016-03, Vol.136, p.234-247

2016

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Multi-enzyme digestion FASP and the ‘Total Protein Approach’-based absolute quantification of the Escherichia coli proteome

Journal of proteomics, 2014-09, Vol.109, p.322-331

2014

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Absolute Proteome Analysis of Colorectal Mucosa, Adenoma, and Cancer Reveals Drastic Changes in Fatty Acid Metabolism and Plasma Membrane Transporters

Journal of proteome research, 2015-09, Vol.14 (9), p.4005-4018

2015

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Brain Phosphoproteome Obtained by a FASP-Based Method Reveals Plasma Membrane Protein Topology

Journal of proteome research, 2010-06, Vol.9 (6), p.3280-3289

2010

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Selective Roles of Vertebrate PCF11 in Premature and Full-Length Transcript Termination

Molecular cell, 2019-04, Vol.74 (1), p.158-172.e9

2019

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Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry

Journal of proteome research, 2010-07, Vol.9 (7), p.3688-3700

2010

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Integrating Proteomics and Enzyme Kinetics Reveals Tissue-Specific Types of the Glycolytic and Gluconeogenic Pathways

Journal of proteome research, 2015-08, Vol.14 (8), p.3263-3273

2015

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Cell‐type‐resolved proteomic analysis of the human liver

Liver international, 2020-07, Vol.40 (7), p.1770-1780

2020

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Quantitative Evaluation of Filter Aided Sample Preparation (FASP) and Multienzyme Digestion FASP Protocols

Fast and Sensitive Total Protein and Peptide Assays for Proteomic Analysis

Quantitative Analysis of Human Red Blood Cell Proteome

A “Proteomic Ruler” for Protein Copy Number and Concentration Estimation without Spike-in Standards

Filter Aided Sample Preparation – A tutorial

Ultradeep Human Phosphoproteome Reveals a Distinct Regulatory Nature of Tyr and Ser/Thr-Based Signaling

Combination of FASP and StageTip-Based Fractionation Allows In-Depth Analysis of the Hippocampal Membrane Proteome

Mapping N-Glycosylation Sites across Seven Evolutionarily Distant Species Reveals a Divergent Substrate Proteome Despite a Common Core Machinery

Filter-Aided Sample Preparation for Proteome Analysis

High Recovery FASP Applied to the Proteomic Analysis of Microdissected Formalin Fixed Paraffin Embedded Cancer Tissues Retrieves Known Colon Cancer Markers

Comparative Proteomic Analysis of Human Liver Tissue and Isolated Hepatocytes with a Focus on Proteins Determining Drug Exposure

A Proteomics Approach to the Protein Normalization Problem: Selection of Unvarying Proteins for MS-Based Proteomics and Western Blotting

Proteasome machinery is instrumental in a common gain-of-function program of the p53 missense mutants in cancer

Universal sample preparation method for proteome analysis

Precision Mapping of an In Vivo N-Glycoproteome Reveals Rigid Topological and Sequence Constraints

Multiple-Enzyme-Digestion Strategy Improves Accuracy and Sensitivity of Label- and Standard-Free Absolute Quantification to a Level That Is Achievable by Analysis with Stable Isotope-Labeled Standard Spiking

Universal sample preparation method for proteome analysis

In-depth quantitative analysis and comparison of the human hepatocyte and hepatoma cell line HepG2 proteomes

Multi-enzyme digestion FASP and the ‘Total Protein Approach’-based absolute quantification of the Escherichia coli proteome

Absolute Proteome Analysis of Colorectal Mucosa, Adenoma, and Cancer Reveals Drastic Changes in Fatty Acid Metabolism and Plasma Membrane Transporters

Brain Phosphoproteome Obtained by a FASP-Based Method Reveals Plasma Membrane Protein Topology

Selective Roles of Vertebrate PCF11 in Premature and Full-Length Transcript Termination

Proteome, Phosphoproteome, and N-Glycoproteome Are Quantitatively Preserved in Formalin-Fixed Paraffin-Embedded Tissue and Analyzable by High-Resolution Mass Spectrometry

Integrating Proteomics and Enzyme Kinetics Reveals Tissue-Specific Types of the Glycolytic and Gluconeogenic Pathways

Cell‐type‐resolved proteomic analysis of the human liver

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