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Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

Nature reviews. Microbiology, 2014-09, Vol.12 (9), p.647-653

2014

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A 3’ external transcribed spacer in a tRNA transcript acts as a sponge for small RNAs to prevent transcriptional noise

Molecular cell, 2015-05, Vol.58 (3), p.393-405

2015

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Comprehensive mapping of the Escherichia coli flagellar regulatory network

PLoS genetics, 2014-10, Vol.10 (10), p.e1004649-e1004649

2014

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Diversification of the Rho transcription termination factor in bacteria

Nucleic acids research, 2024-08, Vol.52 (15), p.8979-8997

2024

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Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape

PLoS genetics, 2015-11, Vol.11 (11), p.e1005641-e1005641

2015

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Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping

eLife, 2021-01, Vol.10

2021

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Widespread suppression of intragenic transcription initiation by H-NS

Genes & development, 2014-02, Vol.28 (3), p.214-219

2014

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Genome-Wide Mapping of the Escherichia coli PhoB Regulon Reveals Many Transcriptionally Inert, Intragenic Binding Sites

mBio, 2023-06, Vol.14 (3), p.e0253522-e0253522

2023

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Zinc depletion induces ribosome hibernation in mycobacteria

Proceedings of the National Academy of Sciences - PNAS, 2018-08, Vol.115 (32), p.8191-8196

2018

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Mapping direct and indirect MarA/SoxS/Rob/RamA regulons in Salmonella Typhimurium reveals repression of csgD and biofilm formation

Microbiology (Society for General Microbiology), 2023-05, Vol.169 (5)

2023

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The transition from transcriptional initiation to elongation

Current opinion in genetics & development, 2008-04, Vol.18 (2), p.130-136

2008

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Maestro of regulation: Riboswitches orchestrate gene expression at the levels of translation, transcription and mRNA decay

RNA biology, 2018-04, Vol.15 (6), p.679-682

2018

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Concerns about "Stress-Induced MazF-Mediated Proteins in Escherichia coli"

mBio, 2019-06, Vol.10 (3)

2019

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Pervasive translation in Mycobacterium tuberculosis

eLife, 2022-03, Vol.11

2022

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Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12

Journal of bacteriology, 2017-04, Vol.199 (7)

2017

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The molecular basis for control of ETEC enterotoxin expression in response to environment and host

PLoS pathogens, 2015-01, Vol.11 (1), p.e1004605-e1004605

2015

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Spurious transcription and its impact on cell function

Transcription, 2018-01, Vol.9 (3), p.182-189

2018

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Widespread antisense transcription in Escherichia coli

mBio, 2010-05, Vol.1 (1)

2010

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Transcription termination and antitermination of bacterial CRISPR arrays

eLife, 2020-10, Vol.9

2020

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The Transition between Transcriptional Initiation and Elongation in E. coli Is Highly Variable and Often Rate Limiting

Molecular cell, 2006-12, Vol.24 (5), p.747-757

2006

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Identification of regulatory RNA in bacterial genomes by genome-scale mapping of transcription start sites

Methods in molecular biology (Clifton, N.J.), 2014, Vol.1103, p.1

2014

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Interplay of transcriptional and small RNA‐dependent control mechanisms regulates chitosugar uptake in Escherichia coli and Salmonella

Molecular microbiology, 2014-05, Vol.92 (4), p.648-658

2014

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FRUIT, a scar-free system for targeted chromosomal mutagenesis, epitope tagging, and promoter replacement in Escherichia coli and Salmonella enterica

PloS one, 2012-09, Vol.7 (9), p.e44841

2012

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Mapping the Regulatory Network for Salmonella enterica Serovar Typhimurium Invasion

mBio, 2016-09, Vol.7 (5)

2016

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Identification of HilD-Regulated Genes in Salmonella enterica Serovar Typhimurium

Journal of Bacteriology, 2014-03, Vol.196 (5), p.1094-1101

2014

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Pervasive transcription: illuminating the dark matter of bacterial transcriptomes

A 3’ external transcribed spacer in a tRNA transcript acts as a sponge for small RNAs to prevent transcriptional noise

Comprehensive mapping of the Escherichia coli flagellar regulatory network

Diversification of the Rho transcription termination factor in bacteria

Leaderless Transcripts and Small Proteins Are Common Features of the Mycobacterial Translational Landscape

Regulatory roles of Escherichia coli 5' UTR and ORF-internal RNAs detected by 3' end mapping

Widespread suppression of intragenic transcription initiation by H-NS

Genome-Wide Mapping of the Escherichia coli PhoB Regulon Reveals Many Transcriptionally Inert, Intragenic Binding Sites

Zinc depletion induces ribosome hibernation in mycobacteria

Mapping direct and indirect MarA/SoxS/Rob/RamA regulons in Salmonella Typhimurium reveals repression of csgD and biofilm formation

The transition from transcriptional initiation to elongation

Maestro of regulation: Riboswitches orchestrate gene expression at the levels of translation, transcription and mRNA decay

Concerns about "Stress-Induced MazF-Mediated Proteins in Escherichia coli"

Pervasive translation in Mycobacterium tuberculosis

Genome-Wide Transcriptional Response to Varying RpoS Levels in Escherichia coli K-12

The molecular basis for control of ETEC enterotoxin expression in response to environment and host

Spurious transcription and its impact on cell function

Widespread antisense transcription in Escherichia coli

Transcription termination and antitermination of bacterial CRISPR arrays

The Transition between Transcriptional Initiation and Elongation in E. coli Is Highly Variable and Often Rate Limiting

Identification of regulatory RNA in bacterial genomes by genome-scale mapping of transcription start sites

Interplay of transcriptional and small RNA‐dependent control mechanisms regulates chitosugar uptake in Escherichia coli and Salmonella

FRUIT, a scar-free system for targeted chromosomal mutagenesis, epitope tagging, and promoter replacement in Escherichia coli and Salmonella enterica

Mapping the Regulatory Network for Salmonella enterica Serovar Typhimurium Invasion

Identification of HilD-Regulated Genes in Salmonella enterica Serovar Typhimurium

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