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A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions

Marine geology, 2014-06, Vol.352, p.409-425

2014

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Python for the Life Sciences: A Gentle Introduction to Python for Life Scientists

1, 2019

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Editorial: Microbiology of deep-sea carbon cycling

Frontiers in microbiology, 2023, Vol.14, p.1236593-1236593

2023

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PyPop: a mature open-source software pipeline for population genomics

Frontiers in immunology, 2024-04, Vol.15, p.1378512-1378512

2024

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Polyyne-producing Burkholderia suppress Globisporangium ultimum damping-off disease of Pisum sativum (pea)

Frontiers in microbiology, 2023-08, Vol.14, p.1240206-1240206

2023

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Phylogeny and physiology of candidate phylum ‘Atribacteria’ (OP9/JS1) inferred from cultivation-independent genomics

The ISME Journal, 2016-02, Vol.10 (2), p.273-286

2016

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Genome mining identifies cepacin as a plant-protective metabolite of the biopesticidal bacterium Burkholderia ambifaria

Nature microbiology, 2019-06, Vol.4 (6), p.996-1005

2019

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Physiological Capabilities of Cryoconite Hole Microorganisms

Frontiers in microbiology, 2020-07, Vol.11

2020

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VarLOCK: sequencing-independent, rapid detection of SARS-CoV-2 variants of concern for point-of-care testing, qPCR pipelines and national wastewater surveillance

Scientific reports, 2023-11, Vol.13 (1), p.20832-20832, Article 20832

2023

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Uncultured Microbial Phyla Suggest Mechanisms for Multi-Thousand-Year Subsistence in Baltic Sea Sediments

mBio, 2019-04, Vol.10 (2)

2019

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Prokaryotic biodiversity and activity in the deep subseafloor biosphere

FEMS microbiology ecology, 2008-11, Vol.66 (2), p.181-196

2008

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Methanogen activity and microbial diversity in Gulf of Cádiz mud volcano sediments

Frontiers in microbiology, 2023-05, Vol.14, p.1157337-1157337

2023

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Extending the Sub-Sea-Floor Biosphere

Science (American Association for the Advancement of Science), 2008-05, Vol.320 (5879), p.1046-1046

2008

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Nitrogen removal performance and bacterial community analysis of a multistage step-feeding tidal flow constructed wetland

Frontiers in water, 2023-02, Vol.5

2023

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Discovery of the Pseudomonas Polyyne Protegencin by a Phylogeny-Guided Study of Polyyne Biosynthetic Gene Cluster Diversity

mBio, 2021-08, Vol.12 (4), p.e0071521

2021

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Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG)

Environmental microbiology, 2009-12, Vol.11 (12), p.3140-3153

2009

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Complex coupled metabolic and prokaryotic community responses to increasing temperatures in anaerobic marine sediments: critical temperatures and substrate changes

FEMS microbiology ecology, 2015-08, Vol.91 (8), p.fiv084-fiv084

2015

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Choline and N,N-Dimethylethanolamine as Direct Substrates for Methanogens

Applied and Environmental Microbiology, 2012-12, Vol.78 (23), p.8298-8303

2012

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Cloning and expression of Burkholderia polyyne biosynthetic gene clusters in Paraburkholderia hosts provides a strategy for biopesticide development

Microbial biotechnology, 2022-10, Vol.15 (10), p.2547-2561

2022

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Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin

FEMS microbiology ecology, 2006-10, Vol.58 (1), p.65-85

2006

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Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing

FEMS microbiology ecology, 2010-05, Vol.72 (2), p.179-197

2010

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Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils

Environmental microbiology, 2005-05, Vol.7 (5), p.676-684

2005

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Grassland Management Regimens Reduce Small-Scale Heterogeneity and Species Diversity of β-Proteobacterial Ammonia Oxidizer Populations

Applied and Environmental Microbiology, 2002-01, Vol.68 (1), p.20-30

2002

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Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190

Environmental microbiology, 2004-03, Vol.6 (3), p.274-287

2004

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Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale

Journal of microbiological methods, 2003-10, Vol.55 (1), p.155-164

2003

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A review of prokaryotic populations and processes in sub-seafloor sediments, including biosphere:geosphere interactions

Python for the Life Sciences: A Gentle Introduction to Python for Life Scientists

Editorial: Microbiology of deep-sea carbon cycling

PyPop: a mature open-source software pipeline for population genomics

Polyyne-producing Burkholderia suppress Globisporangium ultimum damping-off disease of Pisum sativum (pea)

Phylogeny and physiology of candidate phylum ‘Atribacteria’ (OP9/JS1) inferred from cultivation-independent genomics

Genome mining identifies cepacin as a plant-protective metabolite of the biopesticidal bacterium Burkholderia ambifaria

Physiological Capabilities of Cryoconite Hole Microorganisms

VarLOCK: sequencing-independent, rapid detection of SARS-CoV-2 variants of concern for point-of-care testing, qPCR pipelines and national wastewater surveillance

Uncultured Microbial Phyla Suggest Mechanisms for Multi-Thousand-Year Subsistence in Baltic Sea Sediments

Prokaryotic biodiversity and activity in the deep subseafloor biosphere

Methanogen activity and microbial diversity in Gulf of Cádiz mud volcano sediments

Extending the Sub-Sea-Floor Biosphere

Nitrogen removal performance and bacterial community analysis of a multistage step-feeding tidal flow constructed wetland

Discovery of the Pseudomonas Polyyne Protegencin by a Phylogeny-Guided Study of Polyyne Biosynthetic Gene Cluster Diversity

Culturable prokaryotic diversity of deep, gas hydrate sediments: first use of a continuous high-pressure, anaerobic, enrichment and isolation system for subseafloor sediments (DeepIsoBUG)

Complex coupled metabolic and prokaryotic community responses to increasing temperatures in anaerobic marine sediments: critical temperatures and substrate changes

Choline and N,N-Dimethylethanolamine as Direct Substrates for Methanogens

Cloning and expression of Burkholderia polyyne biosynthetic gene clusters in Paraburkholderia hosts provides a strategy for biopesticide development

Prokaryotic community composition and biogeochemical processes in deep subseafloor sediments from the Peru Margin

Prokaryotic functional diversity in different biogeochemical depth zones in tidal sediments of the Severn Estuary, UK, revealed by stable-isotope probing

Links between ammonia oxidizer species composition, functional diversity and nitrification kinetics in grassland soils

Grassland Management Regimens Reduce Small-Scale Heterogeneity and Species Diversity of β-Proteobacterial Ammonia Oxidizer Populations

Diversity of prokaryotes and methanogenesis in deep subsurface sediments from the Nankai Trough, Ocean Drilling Program Leg 190

Assessment of bacterial community structure in the deep sub-seafloor biosphere by 16S rDNA-based techniques: a cautionary tale

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