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COVID-19 and Cancer: Current Challenges and Perspectives

Cancer cell, 2020-11, Vol.38 (5), p.629-646

2020

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Use of Natural Language Processing to Extract Clinical Cancer Phenotypes from Electronic Medical Records

Cancer research (Chicago, Ill.), 2019-11, Vol.79 (21), p.5463-5470

2019

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Combining billing codes, clinical notes, and medications from electronic health records provides superior phenotyping performance

Journal of the American Medical Informatics Association : JAMIA, 2016-04, Vol.23 (e1), p.e20-e27

2016

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Using topic modeling via non-negative matrix factorization to identify relationships between genetic variants and disease phenotypes: A case study of Lipoprotein(a) (LPA)

PloS one, 2019-02, Vol.14 (2), p.e0212112-e0212112

2019

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Integrating cancer genomic data into electronic health records

Genome medicine, 2016-10, Vol.8 (1), p.113-113, Article 113

2016

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A Review of Precision Oncology Knowledgebases for Determining the Clinical Actionability of Genetic Variants

Frontiers in cell and developmental biology, 2020-02, Vol.8, p.48-48

2020

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Optimizing word embeddings for small datasets: a case study on patient portal messages from breast cancer patients

Scientific reports, 2024-07, Vol.14 (1), p.16117-9, Article 16117

2024

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Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC)

Genetics in medicine, 2022-09, Vol.24 (9), p.1991-1991

2022

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Defining the complex phenotype of severe systemic loxoscelism using a large electronic health record cohort

PloS one, 2017-04, Vol.12 (4), p.e0174941

2017

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Evolving patterns in systemic treatment utilization and survival among older patients with advanced cutaneous melanoma

Cancer medicine (Malden, MA), 2024-08, Vol.13 (16), p.e70131-n/a

2024

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Delivering Cancer Care During the COVID-19 Pandemic: Recommendations and Lessons Learned From ASCO Global Webinars

JCO global oncology, 2020-09, Vol.6 (6), p.1461-1471

2020

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Burden of AML, 1990-2019: Estimates From the Global Burden of Disease Study

JCO global oncology, 2023-09, Vol.9 (9), p.e2300229-e2300229

2023

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COVID-19 Vaccine Among Actively-Treated People With Cancer: A Glimpse Into the Known Unknowns?

JNCI : Journal of the National Cancer Institute, 2022-02, Vol.114 (2), p.169-171

2022

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SEETrials: Leveraging large language models for safety and efficacy extraction in oncology clinical trials

Informatics in medicine unlocked, 2024, Vol.50, p.101589, Article 101589

2024

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Systematic review of infectious events with the Bruton tyrosine kinase inhibitor ibrutinib in the treatment of hematologic malignancies

European journal of haematology, 2018-04, Vol.100 (4), p.325-334

2018

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Introducing a Comprehensive Score of Systemic Anticancer Treatment Relevance

Studies in health technology and informatics, 2024-01, Vol.310, p.464

2024

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Oral antivirals for COVID-19 among patients with cancer

Supportive care in cancer, 2024-08, Vol.32 (8), p.496, Article 496

2024

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Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Cancer research (Chicago, Ill.), 2023-12, Vol.83 (23), p.3861-3867

2023

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Looking Back and Looking Forward: My Themes for the Continued Success of JCO Clinical Cancer Informatics

JCO clinical cancer informatics, 2023-06, Vol.7 (7), p.e2300107

Warner, Jeremy L

2023

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It’s Time to Wikify Clinical Documentation: How Collaborative Authorship Can Reduce the Burden and Improve the Quality of the Electronic Health Record

Academic medicine, 2019-05, Vol.94 (5), p.645-650

2019

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Development of a bayesian toxo-equivalence model between docetaxel and paclitaxel

iScience, 2022-04, Vol.25 (4), p.104045-104045, Article 104045

2022

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External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma

Journal of the American Medical Informatics Association : JAMIA, 2013-07, Vol.20 (4), p.696-699

2013

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The Evolving Use of Electronic Health Records (EHR) for Research

Seminars in radiation oncology, 2019-10, Vol.29 (4), p.354-361

2019

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The Importance of Recency of Cancer Diagnosis in Patients Hospitalized with COVID-19-Glimpses from an EHR-based Study

Cancer epidemiology, biomarkers & prevention, 2023-01, Vol.32 (1), p.3-5

2023

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COVID-19 and Cancer: Current Challenges and Perspectives

Use of Natural Language Processing to Extract Clinical Cancer Phenotypes from Electronic Medical Records

Combining billing codes, clinical notes, and medications from electronic health records provides superior phenotyping performance

Using topic modeling via non-negative matrix factorization to identify relationships between genetic variants and disease phenotypes: A case study of Lipoprotein(a) (LPA)

Integrating cancer genomic data into electronic health records

A Review of Precision Oncology Knowledgebases for Determining the Clinical Actionability of Genetic Variants

Optimizing word embeddings for small datasets: a case study on patient portal messages from breast cancer patients

Standards for the classification of pathogenicity of somatic variants in cancer (oncogenicity): Joint recommendations of Clinical Genome Resource (ClinGen), Cancer Genomics Consortium (CGC), and Variant Interpretation for Cancer Consortium (VICC)

Defining the complex phenotype of severe systemic loxoscelism using a large electronic health record cohort

Evolving patterns in systemic treatment utilization and survival among older patients with advanced cutaneous melanoma

Delivering Cancer Care During the COVID-19 Pandemic: Recommendations and Lessons Learned From ASCO Global Webinars

Burden of AML, 1990-2019: Estimates From the Global Burden of Disease Study

COVID-19 Vaccine Among Actively-Treated People With Cancer: A Glimpse Into the Known Unknowns?

SEETrials: Leveraging large language models for safety and efficacy extraction in oncology clinical trials

Systematic review of infectious events with the Bruton tyrosine kinase inhibitor ibrutinib in the treatment of hematologic malignancies

Introducing a Comprehensive Score of Systemic Anticancer Treatment Relevance

Oral antivirals for COVID-19 among patients with cancer

Analysis and Visualization of Longitudinal Genomic and Clinical Data from the AACR Project GENIE Biopharma Collaborative in cBioPortal

Looking Back and Looking Forward: My Themes for the Continued Success of JCO Clinical Cancer Informatics

It’s Time to Wikify Clinical Documentation: How Collaborative Authorship Can Reduce the Burden and Improve the Quality of the Electronic Health Record

Development of a bayesian toxo-equivalence model between docetaxel and paclitaxel

External phenome analysis enables a rational federated query strategy to detect changing rates of treatment-related complications associated with multiple myeloma

The Evolving Use of Electronic Health Records (EHR) for Research

The Importance of Recency of Cancer Diagnosis in Patients Hospitalized with COVID-19-Glimpses from an EHR-based Study

A harmonized meta-knowledgebase of clinical interpretations of somatic genomic variants in cancer

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