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ACPYPE - AnteChamber PYthon Parser interfacE

BMC research notes, 2012-07, Vol.5 (1), p.367-367, Article 367

2012

Volltextzugriff (PDF)

Determination of Secondary Structure Populations in Disordered States of Proteins Using Nuclear Magnetic Resonance Chemical Shifts

Biochemistry (Easton), 2012-03, Vol.51 (11), p.2224-2231

2012

Volltextzugriff (PDF)

Auto-encoding NMR chemical shifts from their native vector space to a residue-level biophysical index

Nature communications, 2019-06, Vol.10 (1), p.2511-2511, Article 2511

2019

Volltextzugriff (PDF)

Deciphering the RRM-RNA recognition code: A computational analysis

PLoS computational biology, 2023-01, Vol.19 (1), p.e1010859-e1010859

2023

Volltextzugriff (PDF)

Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates

Bioinformatics, 2019-11, Vol.35 (22), p.4617-4623

2019

Volltextzugriff (PDF)

The DynaMine webserver: predicting protein dynamics from sequence

Nucleic acids research, 2014-07, Vol.42 (Web Server issue), p.W264

2014

Volltextzugriff (PDF)

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins

Nucleic acids research, 2018-01, Vol.46 (D1), p.D471

2018

Volltextzugriff (PDF)

From protein sequence to dynamics and disorder with DynaMine

Nature communications, 2013-11, Vol.4 (1), p.2741-2741, Article 2741

2013

Volltextzugriff (PDF)

MobiDB: intrinsically disordered proteins in 2021

Nucleic acids research, 2021-01, Vol.49 (D1), p.D361

2021

Volltextzugriff (PDF)

Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity

Biophysical journal, 2016-02, Vol.110 (3), p.572-583

2016

Volltextzugriff (PDF)

Recommendations of the wwPDB NMR Validation Task Force

Structure (London), 2013-09, Vol.21 (9), p.1563-1570

2013

Volltextzugriff (PDF)

AmyPro: a database of proteins with validated amyloidogenic regions

Nucleic acids research, 2018-01, Vol.46 (D1), p.D387

2018

Volltextzugriff (PDF)

Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM

Nature methods, 2021-01, Vol.18 (1), p.60

2021

Volltextzugriff (PDF)

Large-scale structure-informed multiple sequence alignment of proteins with SIMSApiper

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5)

2024

Volltextzugriff (PDF)

Panoramic Perspective on Human Phosphosites

Journal of proteome research, 2022-08, Vol.21 (8), p.1894-1915

2022

Volltextzugriff (PDF)

Critical assessment of protein intrinsic disorder prediction

Nature methods, 2021-05, Vol.18 (5), p.472

2021

Volltextzugriff (PDF)

Exploring the limitations of biophysical propensity scales coupled with machine learning for protein sequence analysis

Scientific reports, 2019-11, Vol.9 (1), p.16932-11, Article 16932

2019

Volltextzugriff (PDF)

New simulation insights on the structural transition mechanism of bovine rhodopsin activation

Proteins, structure, function, and bioinformatics, 2023-06, Vol.91 (6), p.771-780

2023

Volltextzugriff (PDF)

DisProt: intrinsic protein disorder annotation in 2020

Nucleic acids research, 2020-01, Vol.48 (D1), p.D269

2020

Volltextzugriff (PDF)

An Evolutionary View on Disulfide Bond Connectivities Prediction Using Phylogenetic Trees and a Simple Cysteine Mutation Model

PloS one, 2015-07, Vol.10 (7), p.e0131792-e0131792

2015

Volltextzugriff (PDF)

Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

Scientific reports, 2017-08, Vol.7 (1), p.8826-11, Article 8826

2017

Volltextzugriff (PDF)

The CCPN data model for NMR spectroscopy: Development of a software pipeline

Proteins, structure, function, and bioinformatics, 2005-06, Vol.59 (4), p.687-696

2005

Volltextzugriff (PDF)

Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest

Bioinformatics (Oxford, England), 2017-05, Vol.33 (10), p.1479-1487

2017

Volltextzugriff (PDF)

Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping

Bioinformatics, 2018-09, Vol.34 (18), p.3118-3125

2018

Volltextzugriff (PDF)

Deep mutational scanning of essential bacterial proteins can guide antibiotic development

Nature communications, 2023-01, Vol.14 (1), p.241-241, Article 241

2023

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ACPYPE - AnteChamber PYthon Parser interfacE

Determination of Secondary Structure Populations in Disordered States of Proteins Using Nuclear Magnetic Resonance Chemical Shifts

Auto-encoding NMR chemical shifts from their native vector space to a residue-level biophysical index

Deciphering the RRM-RNA recognition code: A computational analysis

Computational identification of prion-like RNA-binding proteins that form liquid phase-separated condensates

The DynaMine webserver: predicting protein dynamics from sequence

MobiDB 3.0: more annotations for intrinsic disorder, conformational diversity and interactions in proteins

From protein sequence to dynamics and disorder with DynaMine

MobiDB: intrinsically disordered proteins in 2021

Early Folding Events, Local Interactions, and Conservation of Protein Backbone Rigidity

Recommendations of the wwPDB NMR Validation Task Force

AmyPro: a database of proteins with validated amyloidogenic regions

Megabodies expand the nanobody toolkit for protein structure determination by single-particle cryo-EM

Large-scale structure-informed multiple sequence alignment of proteins with SIMSApiper

Panoramic Perspective on Human Phosphosites

Critical assessment of protein intrinsic disorder prediction

Exploring the limitations of biophysical propensity scales coupled with machine learning for protein sequence analysis

New simulation insights on the structural transition mechanism of bovine rhodopsin activation

DisProt: intrinsic protein disorder annotation in 2020

An Evolutionary View on Disulfide Bond Connectivities Prediction Using Phylogenetic Trees and a Simple Cysteine Mutation Model

Exploring the Sequence-based Prediction of Folding Initiation Sites in Proteins

The CCPN data model for NMR spectroscopy: Development of a software pipeline

Seeing the trees through the forest: sequence-based homo- and heteromeric protein-protein interaction sites prediction using random forest

Ultra-fast global homology detection with Discrete Cosine Transform and Dynamic Time Warping

Deep mutational scanning of essential bacterial proteins can guide antibiotic development

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