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Temporal Gillespie Algorithm: Fast Simulation of Contagion Processes on Time-Varying Networks

PLoS computational biology, 2015-10, Vol.11 (10), p.e1004579-e1004579

2015

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Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics

PLoS computational biology, 2023-02, Vol.19 (2), p.e1010088-e1010088

2023

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Compensating for population sampling in simulations of epidemic spread on temporal contact networks

Nature communications, 2015-11, Vol.6 (1), p.8860-8860, Article 8860

2015

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Correction: Temporal Gillespie algorithm: Fast simulation of contagion processes on time-varying networks

PLoS computational biology, 2019-07, Vol.15 (7), p.e1007190-e1007190

2019

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Hematopoietic stem cell transplantation chemotherapy causes microglia senescence and peripheral macrophage engraftment in the brain

Nature Medicine, 2022-03, Vol.28 (3), p.517-527

2022

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Data on face-to-face contacts in an office building suggest a low-cost vaccination strategy based on community linkers

Network science (Cambridge University Press), 2015-09, Vol.3 (3), p.326-347

2015

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TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments

Bioinformatics, 2022-05, Vol.38 (11), p.3149-3150

2022

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Filopodial retraction force is generated by cortical actin dynamics and controlled by reversible tethering at the tip

Proceedings of the National Academy of Sciences - PNAS, 2013-11, Vol.110 (47), p.18928-18933

2013

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Transition state theory demonstrated at the micron scale with out-of-equilibrium transport in a confined environment

Nature communications, 2016-01, Vol.7 (1), p.10227-10227, Article 10227

2016

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Optimizing experimental parameters for tracking of diffusing particles

Physical review. E, 2016-08, Vol.94 (2-1), p.022401-022401, Article 022401

Vestergaard, Christian L

2016

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Optimal estimation of diffusion coefficients from single-particle trajectories

Physical review. E, Statistical, nonlinear, and soft matter physics, 2014-02, Vol.89 (2), p.022726-022726, Article 022726

2014

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Recalibrating disease parameters for increasing realism in modeling epidemics in closed settings

BMC infectious diseases, 2016-11, Vol.16 (1), p.676-676, Article 676

2016

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LarvaTagger: manual and automatic tagging of Drosophila larval behaviour

Bioinformatics (Oxford, England), 2024-07, Vol.40 (7)

2024

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Harmonic force spectroscopy measures load-dependent kinetics of individual human β-cardiac myosin molecules

Nature communications, 2015-08, Vol.6 (1), p.7931-7931, Article 7931

2015

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Statistical Tests for Force Inference in Heterogeneous Environments

Scientific reports, 2020-03, Vol.10 (1), p.3783-3783, Article 3783

2020

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Mapping spatio-temporal dynamics of single biomolecules in living cells

Physical biology, 2019-11, Vol.17 (1), p.015003-015003

2019

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Impact of spatially constrained sampling of temporal contact networks on the evaluation of the epidemic risk

European journal of applied mathematics, 2016-12, Vol.27 (6), p.941-957

2016

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How memory generates heterogeneous dynamics in temporal networks

Physical review. E, Statistical, nonlinear, and soft matter physics, 2014-10, Vol.90 (4), p.042805-042805, Article 042805

2014

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Canonical microcircuits and the compressibility of neural connectomes

Biophysical journal, 2022-02, Vol.121 (3), p.270a-270a

2022

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Amortized inference of biomolecule dynamics with graphs

Biophysical journal, 2022-02, Vol.121 (3), p.269a-269a

2022

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Uncovering fundamental features of biological networks

Biophysical journal, 2022-02, Vol.121 (3), p.270a-270a

2022

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Bayesian approach to behavior mapping and complex decision, the Drosophila larva

Biophysical journal, 2022-02, Vol.121 (3), p.153a-153a

2022

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Learning physical properties of anomalous random walks using graph neural networks

Journal of physics. A, Mathematical and theoretical, 2021-06, Vol.54 (23), p.234001

2021

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Objective unsupervised learning of behavioral dynamics at the frontier of information bottleneck principles, physics informed priors, and maximum mean discrepancy statistical testing

Biophysical journal, 2022-02, Vol.121 (3), p.272a-272a

2022

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Randomized Reference Models for Temporal Networks

SIAM review, 2022-11, Vol.64 (4), p.763-830

2022

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Temporal Gillespie Algorithm: Fast Simulation of Contagion Processes on Time-Varying Networks

Simulation-based inference for non-parametric statistical comparison of biomolecule dynamics

Compensating for population sampling in simulations of epidemic spread on temporal contact networks

Correction: Temporal Gillespie algorithm: Fast simulation of contagion processes on time-varying networks

Hematopoietic stem cell transplantation chemotherapy causes microglia senescence and peripheral macrophage engraftment in the brain

Data on face-to-face contacts in an office building suggest a low-cost vaccination strategy based on community linkers

TRamWAy: mapping physical properties of individual biomolecule random motion in large-scale single-particle tracking experiments

Filopodial retraction force is generated by cortical actin dynamics and controlled by reversible tethering at the tip

Transition state theory demonstrated at the micron scale with out-of-equilibrium transport in a confined environment

Optimizing experimental parameters for tracking of diffusing particles

Optimal estimation of diffusion coefficients from single-particle trajectories

Recalibrating disease parameters for increasing realism in modeling epidemics in closed settings

LarvaTagger: manual and automatic tagging of Drosophila larval behaviour

Harmonic force spectroscopy measures load-dependent kinetics of individual human β-cardiac myosin molecules

Statistical Tests for Force Inference in Heterogeneous Environments

Mapping spatio-temporal dynamics of single biomolecules in living cells

Impact of spatially constrained sampling of temporal contact networks on the evaluation of the epidemic risk

How memory generates heterogeneous dynamics in temporal networks

Canonical microcircuits and the compressibility of neural connectomes

Amortized inference of biomolecule dynamics with graphs

Uncovering fundamental features of biological networks

Bayesian approach to behavior mapping and complex decision, the Drosophila larva

Learning physical properties of anomalous random walks using graph neural networks

Objective unsupervised learning of behavioral dynamics at the frontier of information bottleneck principles, physics informed priors, and maximum mean discrepancy statistical testing

Randomized Reference Models for Temporal Networks

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