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PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance

Euro surveillance : bulletin européen sur les maladies transmissibles, 2017-06, Vol.22 (23)

2017

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PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases

Public health reports (1974), 2019-11, Vol.134 (2S), p.22S-28S

2019

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Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States

Emerging infectious diseases, 2019-01, Vol.25 (1), p.82-91

2019

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Shiga Toxin–Producing E. coli Infections Associated with Flour

The New England journal of medicine, 2017-11, Vol.377 (21), p.2036-2043

2017

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Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016

PloS one, 2018-12, Vol.13 (12), p.e0208735-e0208735

2018

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Subtyping of Salmonella enterica Serovar Newport Outbreak Isolates by CRISPR-MVLST and Determination of the Relationship between CRISPR-MVLST and PFGE Results

Journal of Clinical Microbiology, 2013-07, Vol.51 (7), p.2328-2336

2013

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Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

PeerJ (San Francisco, CA), 2017-10, Vol.5, p.e3893, Article e3893

2017

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Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages

Emerging infectious diseases, 2014-09, Vol.20 (9), p.1481-1489

2014

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Recent developments and future prospects in subtyping of foodborne bacterial pathogens

Future microbiology, 2007-04, Vol.2 (2), p.175-185

2007

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Outbreak of Shiga toxin-producing Escherichia coli (STEC) O157:H7 associated with romaine lettuce consumption, 2011

PloS one, 2013-02, Vol.8 (2), p.e55300

2013

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Salmonella Typhimurium Infections Associated with Peanut Products

The New England journal of medicine, 2011-08, Vol.365 (7), p.601-610

2011

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Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks

PeerJ (San Francisco, CA), 2021-11, Vol.9, p.e12446-e12446, Article e12446

2021

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Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

PloS one, 2015-07, Vol.10 (7), p.e0131967-e0131967

2015

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Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli

Journal of microbiological methods, 2016-06, Vol.125, p.70-80

2016

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Outbreaks of Salmonellosis From Small Turtles

Pediatrics (Evanston), 2016-01, Vol.137 (1)

2016

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Epidemiology of a Salmonella enterica subsp. enterica Serovar Typhimurium Strain Associated with a Songbird Outbreak

Applied and Environmental Microbiology, 2012-10, Vol.78 (20), p.7290-7298

2012

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Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

Scientific data, 2020-11, Vol.7 (1), p.402, Article 402

2020

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Second generation subtyping: a proposed PulseNet protocol for multiple-locus variable-number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 (STEC O157)

Foodborne pathogens and disease, 2006-03, Vol.3 (1), p.118

2006

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Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms

Genome Research, 2006-06, Vol.16 (6), p.757-767

2006

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Phylogenetic analysis of enterohemorrhagic Escherichia coli O157, Germany, 1987-2008

Emerging infectious diseases, 2010-04, Vol.16 (4), p.610-616

2010

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Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand

BMC microbiology, 2012-06, Vol.12 (1), p.92-92

2012

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Next-generation sequencing technologies and their application to the study and control of bacterial infections

Clinical microbiology and infection, 2018-04, Vol.24 (4), p.335-341

2018

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Safety Evaluation of Sous Vide-Processed Products with Respect to Nonproteolytic Clostridium botulinum by Use of Challenge Studies and Predictive Microbiological Models

Applied and Environmental Microbiology, 2000-01, Vol.66 (1), p.223-229

2000

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Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius

Journal of infection in developing countries, 2014-04, Vol.8 (4), p.454-460

2014

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Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection

Journal of microbiological methods, 2023-08, Vol.211 (C), p.106784-106784, Article 106784

2023

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PulseNet International: Vision for the implementation of whole genome sequencing (WGS) for global food-borne disease surveillance

PulseNet and the Changing Paradigm of Laboratory-Based Surveillance for Foodborne Diseases

Zoonotic Source Attribution of Salmonella enterica Serotype Typhimurium Using Genomic Surveillance Data, United States

Shiga Toxin–Producing E. coli Infections Associated with Flour

Genome wide characterization of enterotoxigenic Escherichia coli serogroup O6 isolates from multiple outbreaks and sporadic infections from 1975-2016

Subtyping of Salmonella enterica Serovar Newport Outbreak Isolates by CRISPR-MVLST and Determination of the Relationship between CRISPR-MVLST and PFGE Results

Benchmark datasets for phylogenomic pipeline validation, applications for foodborne pathogen surveillance

Genomic epidemiology of Salmonella enterica serotype Enteritidis based on population structure of prevalent lineages

Recent developments and future prospects in subtyping of foodborne bacterial pathogens

Outbreak of Shiga toxin-producing Escherichia coli (STEC) O157:H7 associated with romaine lettuce consumption, 2011

Salmonella Typhimurium Infections Associated with Peanut Products

Evaluating whole-genome sequencing quality metrics for enteric pathogen outbreaks

Canonical Single Nucleotide Polymorphisms (SNPs) for High-Resolution Subtyping of Shiga-Toxin Producing Escherichia coli (STEC) O157:H7

Multiple-locus variable-number tandem repeat analysis for strain discrimination of non-O157 Shiga toxin-producing Escherichia coli

Outbreaks of Salmonellosis From Small Turtles

Epidemiology of a Salmonella enterica subsp. enterica Serovar Typhimurium Strain Associated with a Songbird Outbreak

Gen-FS coordinated proficiency test data for genomic foodborne pathogen surveillance, 2017 and 2018 exercises

Second generation subtyping: a proposed PulseNet protocol for multiple-locus variable-number tandem repeat analysis of Shiga toxin-producing Escherichia coli O157 (STEC O157)

Probing genomic diversity and evolution of Escherichia coli O157 by single nucleotide polymorphisms

Phylogenetic analysis of enterohemorrhagic Escherichia coli O157, Germany, 1987-2008

Characterization of Salmonella enterica serovar Enteritidis isolates recovered from blood and stool specimens in Thailand

Next-generation sequencing technologies and their application to the study and control of bacterial infections

Safety Evaluation of Sous Vide-Processed Products with Respect to Nonproteolytic Clostridium botulinum by Use of Challenge Studies and Predictive Microbiological Models

Emergence and clonal dissemination of Salmonella enterica serovar Enteritidis causing salmonellosis in Mauritius

Evaluation of the Illumina iSeq whole genome sequencing system for enteric disease surveillance and outbreak detection

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