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Genome analysis of the novel putative rotavirus species K

Virus research, 2023-09, Vol.334, p.199171-199171, Article 199171

2023

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Whole Genome Sequence Analysis of a Prototype Strain of the Novel Putative Rotavirus Species L

Viruses, 2022-02, Vol.14 (3), p.462

2022

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Decentralized Investigation of Bacterial Outbreaks Based on Hashed cgMLST

Frontiers in microbiology, 2021-05, Vol.12, p.649517-649517

2021

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Typing methods based on whole genome sequencing data

One health outlook, 2020-02, Vol.2 (1), p.3-19, Article 3

2020

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Distantly Related Rotaviruses in Common Shrews, Germany, 2004-2014

Emerging infectious diseases, 2019-12, Vol.25 (12), p.2310-2314

2019

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Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

Frontiers in microbiology, 2019-08, Vol.10, p.1805-1805

2019

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Berlin Squirrelpox Virus, a New Poxvirus in Red Squirrels, Berlin, Germany

Emerging infectious diseases, 2017-10, Vol.23 (10), p.1726-1729

2017

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Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

Frontiers in microbiology, 2021-02, Vol.12, p.626941

2021

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German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing

Frontiers in microbiology, 2020-09, Vol.11, p.573972-573972

2020

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RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data

PloS one, 2015-09, Vol.10 (9), p.e0137896-e0137896

2015

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Clonal relation between Salmonella enterica subspecies enterica serovar Dublin strains of bovine and food origin in Germany

Frontiers in veterinary science, 2023-05, Vol.10, p.1081611-1081611

2023

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Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

Microorganisms (Basel), 2021-03, Vol.9 (3), p.598

2021

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First Detection of GES-5-Producing Escherichia coli from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production

Microorganisms (Basel), 2020-10, Vol.8 (10), p.1593

2020

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First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep

Gut pathogens, 2019-10, Vol.11 (1), p.48-8, Article 48

2019

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What WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany

Microorganisms (Basel), 2021-09, Vol.9 (9), p.1911

2021

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Whole Genome Characterization of Orthopoxvirus (OPV) Abatino, a Zoonotic Virus Representing a Putative Novel Clade of Old World Orthopoxviruses

Viruses, 2018-10, Vol.10 (10), p.546

2018

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PathoLive—Real-Time Pathogen Identification from Metagenomic Illumina Datasets

Life (Basel, Switzerland), 2022-08, Vol.12 (9), p.1345

2022

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Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

Frontiers in microbiology, 2020-11, Vol.11, p.575377-575377

2020

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Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

Genes, 2021-04, Vol.12 (5), p.644

2021

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Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data

Applied and environmental microbiology, 2020-02, Vol.86 (5)

2020

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Establishment of a Plasmid-Based Reverse Genetics System for the Cell Culture-Adapted Hepatitis E Virus Genotype 3c Strain 47832c

Pathogens (Basel), 2020-02, Vol.9 (3), p.157

2020

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An Early American Smallpox Vaccine Based on Horsepox

The New England journal of medicine, 2017-10, Vol.377 (15), p.1491-1492

2017

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Genome sequence analysis of a novel rotavirus strain indicates a broad genetic diversity of rotavirus A in shrews

Infection, genetics and evolution, 2023-01, Vol.107, p.105392-105392, Article 105392

2023

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Reply to Li et al., "GC Content-Associated Sequencing Bias Caused by Library Preparation Method May Infrequently Affect Salmonella Serotype Prediction Using SeqSero2"

Applied and environmental microbiology, 2020-09, Vol.86 (18)

2020

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Reliable variant calling during runtime of Illumina sequencing

Scientific reports, 2019-11, Vol.9 (1), p.16502-8, Article 16502

2019

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Genome analysis of the novel putative rotavirus species K

Whole Genome Sequence Analysis of a Prototype Strain of the Novel Putative Rotavirus Species L

Decentralized Investigation of Bacterial Outbreaks Based on Hashed cgMLST

Typing methods based on whole genome sequencing data

Distantly Related Rotaviruses in Common Shrews, Germany, 2004-2014

Fishing in the Soup - Pathogen Detection in Food Safety Using Metabarcoding and Metagenomic Sequencing

Berlin Squirrelpox Virus, a New Poxvirus in Red Squirrels, Berlin, Germany

Toward an Integrated Genome-Based Surveillance of Salmonella enterica in Germany

German-Wide Interlaboratory Study Compares Consistency, Accuracy and Reproducibility of Whole-Genome Short Read Sequencing

RAMBO-K: Rapid and Sensitive Removal of Background Sequences from Next Generation Sequencing Data

Clonal relation between Salmonella enterica subspecies enterica serovar Dublin strains of bovine and food origin in Germany

Outcome of Different Sequencing and Assembly Approaches on the Detection of Plasmids and Localization of Antimicrobial Resistance Genes in Commensal Escherichia coli

First Detection of GES-5-Producing Escherichia coli from Livestock—An Increasing Diversity of Carbapenemases Recognized from German Pig Production

First complete genome sequence and comparative analysis of Salmonella enterica subsp. diarizonae serovar 61:k:1,5,(7) indicates host adaptation traits to sheep

What WGS Reveals about Salmonella enterica subsp. enterica in Wildlife in Germany

Whole Genome Characterization of Orthopoxvirus (OPV) Abatino, a Zoonotic Virus Representing a Putative Novel Clade of Old World Orthopoxviruses

PathoLive—Real-Time Pathogen Identification from Metagenomic Illumina Datasets

Proficiency Testing of Metagenomics-Based Detection of Food-Borne Pathogens Using a Complex Artificial Sequencing Dataset

Species-Specific Quality Control, Assembly and Contamination Detection in Microbial Isolate Sequences with AQUAMIS

Performance and Accuracy of Four Open-Source Tools for In Silico Serotyping of Salmonella spp. Based on Whole-Genome Short-Read Sequencing Data

Establishment of a Plasmid-Based Reverse Genetics System for the Cell Culture-Adapted Hepatitis E Virus Genotype 3c Strain 47832c

An Early American Smallpox Vaccine Based on Horsepox

Genome sequence analysis of a novel rotavirus strain indicates a broad genetic diversity of rotavirus A in shrews

Reply to Li et al., "GC Content-Associated Sequencing Bias Caused by Library Preparation Method May Infrequently Affect Salmonella Serotype Prediction Using SeqSero2"

Reliable variant calling during runtime of Illumina sequencing

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