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Mapping the glycosyltransferase fold landscape using interpretable deep learning

Nature communications, 2021-09, Vol.12 (1), p.5656-5656, Article 5656

2021

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Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases

eLife, 2020-04, Vol.9

2020

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Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae

PloS one, 2015-05, Vol.10 (5), p.e0128409-e0128409

2015

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Multi-omics reveals new links between Fructosamine-3-Kinase (FN3K) and core metabolic pathways

NPJ systems biology and applications, 2024-06, Vol.10 (1), p.64-64

2024

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KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases

BMC bioinformatics, 2021-09, Vol.22 (1), p.1-446, Article 446

2021

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Extending compound identification for molecular network using the LipidXplorer database independent method: A proof of concept using glycoalkaloids from Solanum pseudoquina A. St.‐Hil

Phytochemical analysis, 2019-03, Vol.30 (2), p.132-138

2019

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PlantCAZyme: a database for plant carbohydrate-active enzymes

Database : the journal of biological databases and curation, 2014, Vol.2014

2014

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Dereplication of plant phenolics using a mass‐spectrometry database independent method

Phytochemical analysis, 2018-11, Vol.29 (6), p.601-612

2018

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Conservation of Atypical Allostery in C. elegans UDP-Glucose Dehydrogenase

ACS omega, 2019-10, Vol.4 (15), p.16318-16329

2019

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Evolution of Functional Diversity in the Holozoan Tyrosine Kinome

Molecular biology and evolution, 2021-12, Vol.38 (12), p.5625-5639

2021

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Informatic challenges and advances in illuminating the druggable proteome

Drug discovery today, 2024-03, Vol.29 (3), p.103894-103894, Article 103894

2024

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Modularity of the hydrophobic core and evolution of functional diversity in fold A glycosyltransferases

The Journal of biological chemistry, 2022-08, Vol.298 (8), p.102212-102212, Article 102212

2022

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Abstract 1740: Evolution of fold-A glycosyltransferases and GTXplorer, a new tool for comparative glycomics

The Journal of biological chemistry, 2023, Vol.299 (3), p.103746, Article 103746

2023

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Developing New Informatics Approaches for Investigating Sequence-Structure-Function and Evolutionary Relationships in Glycosyltransferases

Taujale, Rahil

2021

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GTXplorer: A portal to navigate and visualize the evolutionary information encoded in fold A glycosyltransferases

Glycobiology (Oxford), 2021-12, Vol.31 (11), p.1472-1477

2021

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Peters plus syndrome mutations affect the function and stability of human β1,3-glucosyltransferase

The Journal of biological chemistry, 2021-07, Vol.297 (1), p.100843-100843, Article 100843

2021

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Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies

Briefings in bioinformatics, 2023-01, Vol.24 (1)

2023

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Draft genome sequence of Talaromyces verruculosus (“Penicillium verruculosum”) strain TS63-9, a fungus with great potential for industrial production of polysaccharide-degrading enzymes

Journal of biotechnology, 2016-02, Vol.219, p.5-6

2016

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Polymerization of the backbone of the pectic polysaccharide rhamnogalacturonan I

Nature plants, 2022-11, Vol.8 (11), p.1289

2022

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Glycosyltransferase Family 43 Is Also Found in Early Eukaryotes and Has Three Subfamilies in Charophycean Green Algae: e0128409

PloS one, 2015-05, Vol.10 (5)

2015

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A Toxoplasma Prolyl Hydroxylase Mediates Oxygen Stress Responses by Regulating Translation Elongation

mBio, 2019-03, Vol.10 (2), p.e00234-19

2019

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Characterization of a cytoplasmic glucosyltransferase that extends the core trisaccharide of the Toxoplasma Skp1 E3 ubiquitin ligase subunit

The Journal of biological chemistry, 2017-11, Vol.292 (45), p.18644-18659

2017

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Structural and biochemical insight into a modular β-1,4-galactan synthase in plants

Nature plants, 2023-03, Vol.9 (3), p.486

2023

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Evolutionary and structural analyses of plant cell wall synthesis-related glycosyltransferase family 43 and 2

Taujale, Rahil

2015

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A italic toggle="yes">Toxoplasma /italic> Prolyl Hydroxylase Mediates Oxygen Stress Responses by Regulating Translation Elongation

mBio, 2019-04, Vol.10 (2)

2019

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Mapping the glycosyltransferase fold landscape using interpretable deep learning

Deep evolutionary analysis reveals the design principles of fold A glycosyltransferases

Glycosyltransferase family 43 is also found in early eukaryotes and has three subfamilies in Charophycean green algae

Multi-omics reveals new links between Fructosamine-3-Kinase (FN3K) and core metabolic pathways

KinOrtho: a method for mapping human kinase orthologs across the tree of life and illuminating understudied kinases

Extending compound identification for molecular network using the LipidXplorer database independent method: A proof of concept using glycoalkaloids from Solanum pseudoquina A. St.‐Hil

PlantCAZyme: a database for plant carbohydrate-active enzymes

Dereplication of plant phenolics using a mass‐spectrometry database independent method

Conservation of Atypical Allostery in C. elegans UDP-Glucose Dehydrogenase

Evolution of Functional Diversity in the Holozoan Tyrosine Kinome

Informatic challenges and advances in illuminating the druggable proteome

Modularity of the hydrophobic core and evolution of functional diversity in fold A glycosyltransferases

Abstract 1740: Evolution of fold-A glycosyltransferases and GTXplorer, a new tool for comparative glycomics

Developing New Informatics Approaches for Investigating Sequence-Structure-Function and Evolutionary Relationships in Glycosyltransferases

GTXplorer: A portal to navigate and visualize the evolutionary information encoded in fold A glycosyltransferases

Peters plus syndrome mutations affect the function and stability of human β1,3-glucosyltransferase

Tree visualizations of protein sequence embedding space enable improved functional clustering of diverse protein superfamilies

Draft genome sequence of Talaromyces verruculosus (“Penicillium verruculosum”) strain TS63-9, a fungus with great potential for industrial production of polysaccharide-degrading enzymes

Polymerization of the backbone of the pectic polysaccharide rhamnogalacturonan I

Glycosyltransferase Family 43 Is Also Found in Early Eukaryotes and Has Three Subfamilies in Charophycean Green Algae: e0128409

A Toxoplasma Prolyl Hydroxylase Mediates Oxygen Stress Responses by Regulating Translation Elongation

Characterization of a cytoplasmic glucosyltransferase that extends the core trisaccharide of the Toxoplasma Skp1 E3 ubiquitin ligase subunit

Structural and biochemical insight into a modular β-1,4-galactan synthase in plants

Evolutionary and structural analyses of plant cell wall synthesis-related glycosyltransferase family 43 and 2

A italic toggle="yes">Toxoplasma /italic> Prolyl Hydroxylase Mediates Oxygen Stress Responses by Regulating Translation Elongation

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