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Mining microbial metabolism

Nature chemical biology, 2023-05, Vol.19 (5), p.544-545

2023

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Engineering microbial consortia by division of labor

Microbial cell factories, 2019-02, Vol.18 (1), p.35-35, Article 35

2019

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Machine learning framework for assessment of microbial factory performance

PloS one, 2019-01, Vol.14 (1), p.e0210558-e0210558

2019

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Metabolic Engineering of Synechocystis sp. Strain PCC 6803 for Isobutanol Production

Applied and Environmental Microbiology, 2013-02, Vol.79 (3), p.908-914

2013

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Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory

Marine Drugs, 2013-08, Vol.11 (8), p.2894-2916

2013

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Photoheterotrophic Fluxome in Synechocystis sp. Strain PCC 6803 and Its Implications for Cyanobacterial Bioenergetics

Journal of bacteriology, 2015-03, Vol.197 (5), p.943-950

2015

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Engineering the oleaginous yeast Yarrowia lipolytica to produce the aroma compound β-ionone

Microbial cell factories, 2018-09, Vol.17 (1), p.136-136, Article 136

2018

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Decoding how a soil bacterium extracts building blocks and metabolic energy from ligninolysis provides road map for lignin valorization

Proceedings of the National Academy of Sciences - PNAS, 2016-10, Vol.113 (40), p.E5802-E5811

2016

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Photoautotrophic production of D-lactic acid in an engineered cyanobacterium

Microbial cell factories, 2013-11, Vol.12 (1), p.117-117

2013

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Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming

PLoS computational biology, 2016-04, Vol.12 (4), p.e1004838-e1004838

2016

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Effects of inhibitory compounds in lignocellulosic hydrolysates on Mortierella isabellina growth and carbon utilization

Bioresource technology, 2015-05, Vol.183, p.18-24

2015

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Cyanobacterial carbon metabolism: Fluxome plasticity and oxygen dependence

Biotechnology and bioengineering, 2017-07, Vol.114 (7), p.1593-1602

2017

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Incomplete Wood–Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi

Proceedings of the National Academy of Sciences - PNAS, 2014-04, Vol.111 (17), p.6419-6424

2014

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Biofuel production: an odyssey from metabolic engineering to fermentation scale-up

Frontiers in microbiology, 2014-07, Vol.5, p.344-344

2014

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Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1

PLoS computational biology, 2012-02, Vol.8 (2), p.e1002376-e1002376

2012

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Photobiological production of high-value pigments via compartmentalized co-cultures using Ca-alginate hydrogels

Scientific reports, 2022-12, Vol.12 (1), p.22163-22163, Article 22163

2022

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Deciphering Clostridium metabolism and its responses to bioreactor mass transfer during syngas fermentation

Scientific reports, 2017-08, Vol.7 (1), p.10090-11, Article 10090

2017

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Carbohydrate metabolism and carbon fixation in Roseobacter denitrificans OCh114

PloS one, 2009-10, Vol.4 (10), p.e7233-e7233

2009

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Anti-microbial activities of aerosolized transition metal oxide nanoparticles

Chemosphere (Oxford), 2010-07, Vol.80 (5), p.525-529

2010

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Artificial intelligence: a solution to involution of design–build–test–learn cycle

Current opinion in biotechnology, 2022-06, Vol.75, p.102712-102712, Article 102712

2022

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Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications

Frontiers in microbiology, 2011-01, Vol.2, p.165-165

2011

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Boosting d-lactate production in engineered cyanobacteria using sterilized anaerobic digestion effluents

Bioresource technology, 2014-10, Vol.169, p.462-467

2014

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Engineering Escherichia coli to convert acetic acid to free fatty acids

Biochemical engineering journal, 2013-07, Vol.76, p.60-69

2013

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Charge-Associated Effects of Fullerene Derivatives on Microbial Structural Integrity and Central Metabolism

Nano letters, 2007-03, Vol.7 (3), p.754-760

2007

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Metabolic Flux Analysis of the Mixotrophic Metabolisms in the Green Sulfur Bacterium Chlorobaculum tepidum

The Journal of biological chemistry, 2010-12, Vol.285 (50), p.39544-39550

2010

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Mining microbial metabolism

Engineering microbial consortia by division of labor

Machine learning framework for assessment of microbial factory performance

Metabolic Engineering of Synechocystis sp. Strain PCC 6803 for Isobutanol Production

Development of Synechocystis sp. PCC 6803 as a phototrophic cell factory

Photoheterotrophic Fluxome in Synechocystis sp. Strain PCC 6803 and Its Implications for Cyanobacterial Bioenergetics

Engineering the oleaginous yeast Yarrowia lipolytica to produce the aroma compound β-ionone

Decoding how a soil bacterium extracts building blocks and metabolic energy from ligninolysis provides road map for lignin valorization

Photoautotrophic production of D-lactic acid in an engineered cyanobacterium

Rapid Prediction of Bacterial Heterotrophic Fluxomics Using Machine Learning and Constraint Programming

Effects of inhibitory compounds in lignocellulosic hydrolysates on Mortierella isabellina growth and carbon utilization

Cyanobacterial carbon metabolism: Fluxome plasticity and oxygen dependence

Incomplete Wood–Ljungdahl pathway facilitates one-carbon metabolism in organohalide-respiring Dehalococcoides mccartyi

Biofuel production: an odyssey from metabolic engineering to fermentation scale-up

Integrating flux balance analysis into kinetic models to decipher the dynamic metabolism of Shewanella oneidensis MR-1

Photobiological production of high-value pigments via compartmentalized co-cultures using Ca-alginate hydrogels

Deciphering Clostridium metabolism and its responses to bioreactor mass transfer during syngas fermentation

Carbohydrate metabolism and carbon fixation in Roseobacter denitrificans OCh114

Anti-microbial activities of aerosolized transition metal oxide nanoparticles

Artificial intelligence: a solution to involution of design–build–test–learn cycle

Carbon metabolic pathways in phototrophic bacteria and their broader evolutionary implications

Boosting d-lactate production in engineered cyanobacteria using sterilized anaerobic digestion effluents

Engineering Escherichia coli to convert acetic acid to free fatty acids

Charge-Associated Effects of Fullerene Derivatives on Microbial Structural Integrity and Central Metabolism

Metabolic Flux Analysis of the Mixotrophic Metabolisms in the Green Sulfur Bacterium Chlorobaculum tepidum

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