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Feature selection strategies for drug sensitivity prediction

Scientific reports, 2020-06, Vol.10 (1), p.9377, Article 9377

2020

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Interpretable deep recommender system model for prediction of kinase inhibitor efficacy across cancer cell lines

Scientific reports, 2021-08, Vol.11 (1), p.1-16, Article 15993

2021

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Immune cell type signature discovery and random forest classification for analysis of single cell gene expression datasets

Frontiers in immunology, 2023-08, Vol.14, p.1194745-1194745

2023

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CONET: copy number event tree model of evolutionary tumor history for single-cell data

Genome Biology, 2022-06, Vol.23 (1), p.128-35, Article 128

2022

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Synthetic lethality prediction in DNA damage repair, chromatin remodeling and the cell cycle using multi-omics data from cell lines and patients

Scientific reports, 2023-04, Vol.13 (1), p.7049-7049, Article 7049

2023

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RosettaSX: Reliable gene expression signature scoring of cancer models and patients

Neoplasia (New York, N.Y.), 2021-11, Vol.23 (11), p.1069-1077

2021

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Association of EGFR Expression Level and Cetuximab Activity in Patient-Derived Xenograft Models of Human Non-Small Cell Lung Cancer

Clinical cancer research, 2014-09, Vol.20 (17), p.4478-4487

2014

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The Death-domain Fold of the ASC PYRIN Domain, Presenting a Basis for PYRIN/PYRIN Recognition

Journal of molecular biology, 2003-10, Vol.332 (5), p.1155-1163

2003

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The DAPIN family: a novel domain links apoptotic and interferon response proteins

Trends in biochemical sciences (Amsterdam. Regular ed.), 2001-02, Vol.26 (2), p.83-85

2001

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Systematic identification of immunoreceptor tyrosine-based inhibitory motifs in the human proteome

Cellular signalling, 2004-04, Vol.16 (4), p.435-456

2004

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Nonribosomal Peptide Synthesis in Schizosaccharomyces pombe and the Architectures of Ferrichrome-Type Siderophore Synthetases in Fungi

Chembiochem : a European journal of chemical biology, 2006-04, Vol.7 (4), p.612-622

2006

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A genome-wide map of aberrantly expressed chromosomal islands in colorectal cancer

Molecular cancer, 2006-09, Vol.5 (1), p.37-37

2006

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An Interferon Response Gene Expression Signature Is Activated in a Subset of Medulloblastomas

Translational oncology, 2012-08, Vol.5 (4), p.297-IN6

Staub, Eike

2012

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Stromal signals dominate gene expression signature scores that aim to describe cancer cell-intrinsic stemness or mesenchymality characteristics

Cancer research communications, 2024-02, Vol.4 (2), p.516-529

2024

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Abstract A38: A 4-gene YAP-related pathway expression signature informs about dependence of tumors on Hippo pathway signaling

Molecular cancer research, 2020-08, Vol.18 (8_Supplement), p.A38-A38

2020

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Genetic Interactions and Tissue Specificity Modulate the Association of Mutations with Drug Response

Molecular cancer therapeutics, 2020-03, Vol.19 (3), p.927-936

2020

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Female sex and estrogen receptor-beta attenuate cardiac remodeling and apoptosis in pressure overload

American journal of physiology. Regulatory, integrative and comparative physiology, 2010-06, Vol.298 (6), p.R1597-R1606

2010

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Genome-wide expression patterns of invasion front, inner tumor mass and surrounding normal epithelium of colorectal tumors

Molecular cancer, 2007-12, Vol.6 (1), p.79-79

2007

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The Highly Conserved LepA Is a Ribosomal Elongation Factor that Back-Translocates the Ribosome

Cell, 2006-11, Vol.127 (4), p.721-733

2006

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An Interferon Response Gene Expression Signature Is Activated in a Subset of Medulloblastomas12

Translational oncology, 2012-08, Vol.5 (4), p.297-304

Staub, Eike

2012

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Abstract 1918: A novel computational framework predicts synthetic lethal interactions between key regulators of the DNA damage response and chromatin modifiers

Cancer research (Chicago, Ill.), 2022-06, Vol.82 (12_Supplement), p.1918-1918

2022

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Abstract 582: Prognostic and predictive value of plasma protein signatures in a phase I/II trial of abituzumab combined with cetuximab/irinotecan in second-line KRAS wild-type metastatic colorectal cancer (mCRC)

Cancer research (Chicago, Ill.), 2015-08, Vol.75 (15_Supplement), p.582-582

2015

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Activating and deactivating mutations in the receptor interaction site of GDF5 cause symphalangism or brachydactyly type A2

The Journal of clinical investigation, 2005-09, Vol.115 (9), p.2373-2381

2005

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Different structural organization of the encephalopsin gene in man and mouse

Gene, 2002-07, Vol.295 (1), p.27-32

2002

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An expression module of WIPF1-coexpressed genes identifies patients with favorable prognosis in three tumor types

Journal of molecular medicine (Berlin, Germany), 2009-06, Vol.87 (6), p.633-644

2009

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Feature selection strategies for drug sensitivity prediction

Interpretable deep recommender system model for prediction of kinase inhibitor efficacy across cancer cell lines

Immune cell type signature discovery and random forest classification for analysis of single cell gene expression datasets

CONET: copy number event tree model of evolutionary tumor history for single-cell data

Synthetic lethality prediction in DNA damage repair, chromatin remodeling and the cell cycle using multi-omics data from cell lines and patients

RosettaSX: Reliable gene expression signature scoring of cancer models and patients

Association of EGFR Expression Level and Cetuximab Activity in Patient-Derived Xenograft Models of Human Non-Small Cell Lung Cancer

The Death-domain Fold of the ASC PYRIN Domain, Presenting a Basis for PYRIN/PYRIN Recognition

The DAPIN family: a novel domain links apoptotic and interferon response proteins

Systematic identification of immunoreceptor tyrosine-based inhibitory motifs in the human proteome

Nonribosomal Peptide Synthesis in Schizosaccharomyces pombe and the Architectures of Ferrichrome-Type Siderophore Synthetases in Fungi

A genome-wide map of aberrantly expressed chromosomal islands in colorectal cancer

An Interferon Response Gene Expression Signature Is Activated in a Subset of Medulloblastomas

Stromal signals dominate gene expression signature scores that aim to describe cancer cell-intrinsic stemness or mesenchymality characteristics

Abstract A38: A 4-gene YAP-related pathway expression signature informs about dependence of tumors on Hippo pathway signaling

Genetic Interactions and Tissue Specificity Modulate the Association of Mutations with Drug Response

Female sex and estrogen receptor-beta attenuate cardiac remodeling and apoptosis in pressure overload

Genome-wide expression patterns of invasion front, inner tumor mass and surrounding normal epithelium of colorectal tumors

The Highly Conserved LepA Is a Ribosomal Elongation Factor that Back-Translocates the Ribosome

An Interferon Response Gene Expression Signature Is Activated in a Subset of Medulloblastomas12

Abstract 1918: A novel computational framework predicts synthetic lethal interactions between key regulators of the DNA damage response and chromatin modifiers

Abstract 582: Prognostic and predictive value of plasma protein signatures in a phase I/II trial of abituzumab combined with cetuximab/irinotecan in second-line KRAS wild-type metastatic colorectal cancer (mCRC)

Activating and deactivating mutations in the receptor interaction site of GDF5 cause symphalangism or brachydactyly type A2

Different structural organization of the encephalopsin gene in man and mouse

An expression module of WIPF1-coexpressed genes identifies patients with favorable prognosis in three tumor types

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