UB Paderborn / Katalog / Suche / in CDI

A comprehensive estimation of country-level basic reproduction numbers R0 for COVID-19: Regime regression can automatically estimate the end of the exponential phase in epidemic data

PloS one, 2021-07, Vol.16 (7), p.e0254145-e0254145

2021

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Estimating the basic reproduction number of a pathogen in a single host when only a single founder successfully infects

PloS one, 2020-01, Vol.15 (1), p.e0227127-e0227127

2020

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Structural prediction of RNA switches using conditional base-pair probabilities

PloS one, 2019-06, Vol.14 (6), p.e0217625-e0217625

2019

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Estimating age-stratified transmission and reproduction numbers during the early exponential phase of an epidemic: A case study with COVID-19 data

Epidemics, 2023-09, Vol.44, p.100714-100714, Article 100714

2023

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Correction: Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

PloS one, 2021-04, Vol.16 (4), p.e0250030-e0250030

2021

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Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

PloS one, 2020-08, Vol.15 (8), p.e0237507-e0237507

2020

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A closed formula relevant to 'Theory of local k-mer selection with applications to long-read alignment' by Jim Shaw and Yun William Yu

Bioinformatics (Oxford, England), 2022-10, Vol.38 (20), p.4848-4849

2022

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Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic

PloS one, 2016-09, Vol.11 (9), p.e0163688-e0163688

2016

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MultiDomainBenchmark: a multi-domain query and subject database suite

BMC bioinformatics, 2019-02, Vol.20 (1), p.77-9, Article 77

2019

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Hemolysis Pathways during Storage of Erythrocytes and Inter-Donor Variability in Erythrocyte Morphology

Transfusion medicine and hemotherapy, 2021-02, Vol.48 (1), p.39-47

2021

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Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera

PloS one, 2013-02, Vol.8 (2), p.e54529-e54529

2013

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Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA

BMC genomics, 2018-12, Vol.19 (1), p.896-896, Article 896

2018

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A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups

Algorithms for molecular biology, 2020-09, Vol.15 (1), p.17-17, Article 17

2020

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How to optimally sample a sequence for rapid analysis

Bioinformatics (Oxford, England), 2023-02, Vol.39 (2)

2023

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An accurate approximation for the expected site frequency spectrum in a Galton–Watson process under an infinite sites mutation model

Theoretical population biology, 2019-06, Vol.127, p.7-15

Spouge, John L.

2019

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Coalescent: an open-source and scalable framework for exact calculations in coalescent theory

BMC bioinformatics, 2012-10, Vol.13 (1), p.257-257, Article 257

2012

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Discovery of Kaposi’s sarcoma herpesvirus-encoded circular RNAs and a human antiviral circular RNA

Proceedings of the National Academy of Sciences - PNAS, 2018-12, Vol.115 (50), p.12805-12810

2018

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Coalescent: an open-science framework for importance sampling in coalescent theory

PeerJ (San Francisco, CA), 2015-08, Vol.3, p.e1203-e1203

2015

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DNA barcode for land plants

Proceedings of the National Academy of Sciences - PNAS, 2009-08, Vol.106 (31), p.12794-12797

2009

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Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites

BMC bioinformatics, 2008-06, Vol.9 (1), p.262-262, Article 262

2008

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Frameshift alignment: statistics and post-genomic applications

Bioinformatics (Oxford, England), 2014-12, Vol.30 (24), p.3575-3582

2014

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New finite-size correction for local alignment score distributions

BMC research notes, 2012-06, Vol.5 (1), p.286-286, Article 286

2012

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Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

Nucleic acids research, 2001-07, Vol.29 (14), p.2994

2001

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The whole alignment and nothing but the alignment: the problem of spurious alignment flanks

Nucleic acids research, 2008-10, Vol.36 (18), p.5863

2008

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A comprehensive estimation of country-level basic reproduction numbers R0 for COVID-19: Regime regression can automatically estimate the end of the exponential phase in epidemic data

Estimating the basic reproduction number of a pathogen in a single host when only a single founder successfully infects

CBOL protist working group: barcoding eukaryotic richness beyond the animal, plant, and fungal kingdoms

Structural prediction of RNA switches using conditional base-pair probabilities

Estimating age-stratified transmission and reproduction numbers during the early exponential phase of an epidemic: A case study with COVID-19 data

Correction: Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

Figures of merit and statistics for detecting faulty species identification with DNA barcodes: A case study in Ramaria and related fungal genera

A closed formula relevant to 'Theory of local k-mer selection with applications to long-read alignment' by Jim Shaw and Yun William Yu

Changes in the Plasticity of HIV-1 Nef RNA during the Evolution of the North American Epidemic

MultiDomainBenchmark: a multi-domain query and subject database suite

Hemolysis Pathways during Storage of Erythrocytes and Inter-Donor Variability in Erythrocyte Morphology

Fungi in Thailand: a case study of the efficacy of an ITS barcode for automatically identifying species within the Annulohypoxylon and Hypoxylon genera

Alignment-free genome comparison enables accurate geographic sourcing of white oak DNA

A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups

How to optimally sample a sequence for rapid analysis

An accurate approximation for the expected site frequency spectrum in a Galton–Watson process under an infinite sites mutation model

Coalescent: an open-source and scalable framework for exact calculations in coalescent theory

Discovery of Kaposi’s sarcoma herpesvirus-encoded circular RNAs and a human antiviral circular RNA

Coalescent: an open-science framework for importance sampling in coalescent theory

DNA barcode for land plants

Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites

Frameshift alignment: statistics and post-genomic applications

New finite-size correction for local alignment score distributions

Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements

The whole alignment and nothing but the alignment: the problem of spurious alignment flanks

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