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RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

Proceedings of the National Academy of Sciences - PNAS, 2015-11, Vol.112 (47), p.14728-14733

2015

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Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations

The Plant cell, 2013-08, Vol.25 (8), p.2783-2797

2013

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Genomic distribution of H3K9me2 and DNA methylation in a maize genome

PloS one, 2014-08, Vol.9 (8), p.e105267-e105267

2014

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Genetic Perturbation of the Maize Methylome

The Plant cell, 2014-12, Vol.26 (12), p.4602-4616

2014

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CyVerse: Cyberinfrastructure for open science

PLoS computational biology, 2024-02, Vol.20 (2), p.e1011270-e1011270

2024

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Genome-Wide Analysis of the Arabidopsis Replication Timing Program

Plant physiology (Bethesda), 2018-03, Vol.176 (3), p.2166-2185

2018

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Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips

The Plant cell, 2017-09, Vol.29 (9), p.2126-2149

2017

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Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots

PLoS genetics, 2020-10, Vol.16 (10), p.e1008623

2020

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Repliscan: a tool for classifying replication timing regions

BMC bioinformatics, 2017-08, Vol.18 (1), p.362-362, Article 362

2017

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Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways

G3 : genes - genomes - genetics, 2018-06, Vol.8 (6), p.1921-1932

2018

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ANN1 and ANN2 Function in Post-Phloem Sugar Transport in Root Tips to Affect Primary Root Growth

Plant physiology (Bethesda), 2018-09, Vol.178 (1), p.390-401

2018

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Conserved dual-mode gene regulation programs in higher eukaryotes

Nucleic acids research, 2021-03, Vol.49 (5), p.2583-2597

2021

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ANN1 and ANN2 Function in Post-Phloem Sugar Transport in Root Tips to Affect Primary Root Growth1[OPEN]

Plant physiology (Bethesda), 2018-07, Vol.178 (1), p.390-401

2018

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Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations

The Plant cell, 2013-08, Vol.25 (8), p.2783-2797

2013

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Implications of CpG islands on chromosomal architectures and modes of global gene regulation

Nucleic acids research, 2018-05, Vol.46 (9), p.4382-4391

2018

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Apyrase Suppression Raises Extracellular ATP Levels and Induces Gene Expression and Cell Wall Changes Characteristic of Stress Responses1[C][W][OPEN]

Plant physiology (Bethesda), 2014-04, Vol.164 (4), p.2054-2067

2014

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Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize

Plant physiology (Bethesda), 2015-08, Vol.168 (4), p.1262-1274

2015

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A Protocol for Genome-Wide Analysis of DNA Replication Timing in Intact Root Tips

Methods in molecular biology (Clifton, N.J.), 2022, Vol.2382, p.29

2022

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CpG island-mediated global gene regulatory modes in mouse embryonic stem cells

Nature communications, 2014-11, Vol.5 (1), p.5490-5490, Article 5490

2014

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Apyrase Suppression Raises Extracellular ATP Levels and Induces Gene Expression and Cell Wall Changes Characteristic of Stress Responses

Plant physiology (Bethesda), 2014-04, Vol.164 (4), p.2054-2067

2014

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Genome-Wide Analysis of the Arabidopsis Replication Timing Program1[OPEN]

Plant physiology (Bethesda), 2018-01, Vol.176 (3), p.2166-2185

2018

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Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize1[OPEN]

Plant physiology (Bethesda), 2015-04, Vol.168 (4), p.1262-1274

2015

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Early COVID-19 Pandemic Modeling: Three Compartmental Model Case Studies From Texas, USA

Computing in science & engineering, 2021-01, Vol.23 (1), p.25-34

2021

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Content-based comparison for collections identification

2016 IEEE International Conference on Big Data (Big Data), 2016, p.3283-3289

2016

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Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure

Data and information management, 2019-03, Vol.3 (1), p.26-39

2019

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RNA-directed DNA methylation enforces boundaries between heterochromatin and euchromatin in the maize genome

Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations

Genomic distribution of H3K9me2 and DNA methylation in a maize genome

Genetic Perturbation of the Maize Methylome

CyVerse: Cyberinfrastructure for open science

Genome-Wide Analysis of the Arabidopsis Replication Timing Program

Genomic Analysis of the DNA Replication Timing Program during Mitotic S Phase in Maize (Zea mays) Root Tips

Comparing DNA replication programs reveals large timing shifts at centromeres of endocycling cells in maize roots

Repliscan: a tool for classifying replication timing regions

Subtle Perturbations of the Maize Methylome Reveal Genes and Transposons Silenced by Chromomethylase or RNA-Directed DNA Methylation Pathways

ANN1 and ANN2 Function in Post-Phloem Sugar Transport in Root Tips to Affect Primary Root Growth

Conserved dual-mode gene regulation programs in higher eukaryotes

ANN1 and ANN2 Function in Post-Phloem Sugar Transport in Root Tips to Affect Primary Root Growth1[OPEN]

Epigenetic and Genetic Influences on DNA Methylation Variation in Maize Populations

Implications of CpG islands on chromosomal architectures and modes of global gene regulation

Apyrase Suppression Raises Extracellular ATP Levels and Induces Gene Expression and Cell Wall Changes Characteristic of Stress Responses1[C][W][OPEN]

Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize

A Protocol for Genome-Wide Analysis of DNA Replication Timing in Intact Root Tips

CpG island-mediated global gene regulatory modes in mouse embryonic stem cells

Apyrase Suppression Raises Extracellular ATP Levels and Induces Gene Expression and Cell Wall Changes Characteristic of Stress Responses

Genome-Wide Analysis of the Arabidopsis Replication Timing Program1[OPEN]

Examining the Causes and Consequences of Context-Specific Differential DNA Methylation in Maize1[OPEN]

Early COVID-19 Pandemic Modeling: Three Compartmental Model Case Studies From Texas, USA

Content-based comparison for collections identification

Identifier Services: Modeling and Implementing Distributed Data Management in Cyberinfrastructure

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