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No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2

Nature communications, 2020-11, Vol.11 (1), p.5986-5986, Article 5986

2020

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The global distribution and spread of the mobilized colistin resistance gene mcr-1

Nature communications, 2018-03, Vol.9 (1), p.1179-9, Article 1179

2018

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Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

Infection, genetics and evolution, 2020-09, Vol.83, p.104351-104351, Article 104351

2020

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Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM

Nature communications, 2022-03, Vol.13 (1), p.1131-1131, Article 1131

2022

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A longitudinal study reveals persistence of antimicrobial resistance on livestock farms is not due to antimicrobial usage alone

Frontiers in microbiology, 2023-03, Vol.14, p.1070340-1070340

2023

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Gut to lung translocation and antibiotic mediated selection shape the dynamics of Pseudomonas aeruginosa in an ICU patient

Nature communications, 2022-11, Vol.13 (1), p.6523-6523, Article 6523

2022

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Mixed strain pathogen populations accelerate the evolution of antibiotic resistance in patients

Nature communications, 2023-07, Vol.14 (1), p.4083-4083, Article 4083

2023

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Drivers of methicillin-resistant Staphylococcus aureus (MRSA) lineage replacement in China

Genome medicine, 2021-10, Vol.13 (1), p.171-171, Article 171

2021

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Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

Gigascience, 2020-02, Vol.9 (2)

2020

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Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

Microbial genomics, 2019-09, Vol.5 (9)

2019

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The evolution of colistin resistance increases bacterial resistance to host antimicrobial peptides and virulence

eLife, 2023-04, Vol.12

2023

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Pre-existing chromosomal polymorphisms in pathogenic E. coli potentiate the evolution of resistance to a last-resort antibiotic

eLife, 2022-08, Vol.11

2022

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Null models for gene enrichment in plasmids

Proceedings of the National Academy of Sciences - PNAS, 2021-05, Vol.118 (21), p.1

Shaw, Liam P

2021

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Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK

eLife, 2023-03, Vol.12

2023

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The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

Environmental microbiome, 2019-10, Vol.14 (1), p.7-15, Article 7

2019

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Correction to: Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

BMC genomics, 2019-05, Vol.20 (1), p.433-433, Article 433

2019

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The phylogenetic range of bacterial and viral pathogens of vertebrates

Molecular ecology, 2020-09, Vol.29 (17), p.3361-3379

2020

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From Theory to Practice: Translating Whole-Genome Sequencing (WGS) into the Clinic

Trends in microbiology (Regular ed.), 2018-12, Vol.26 (12), p.1035-1048

2018

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Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria

Nucleic acids research, 2023-07, Vol.51 (13), p.6806

2023

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Electronic application to improve management of infections in low-income neonatal units: pilot implementation of the NeoTree beta app in a public sector hospital in Zimbabwe

BMJ open quality, 2021-01, Vol.10 (1), p.e001043

2021

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Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene bla NDM

Nature communications, 2022-12, Vol.13 (1), p.1-13

2022

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Modelling microbiome recovery after antibiotics using a stability landscape framework

The ISME Journal, 2019-07, Vol.13 (7), p.1845-1856

2019

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Portable sequencing, genomic data, and scale in global emerging infectious disease surveillance

Geo : geography and environment, 2018-07, Vol.5 (2), p.e00066-n/a

2018

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Children With Cystic Fibrosis Are Infected With Multiple Subpopulations of Mycobacterium abscessus With Different Antimicrobial Resistance Profiles

Clinical infectious diseases, 2019-10, Vol.69 (10), p.1678-1686

2019

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Regulatory fine-tuning of mcr-1 increases bacterial fitness and stabilises antibiotic resistance in agricultural settings

The ISME Journal, 2023-11, Vol.17 (11), p.2058-2069

2023

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No evidence for increased transmissibility from recurrent mutations in SARS-CoV-2

The global distribution and spread of the mobilized colistin resistance gene mcr-1

Emergence of genomic diversity and recurrent mutations in SARS-CoV-2

Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene blaNDM

A longitudinal study reveals persistence of antimicrobial resistance on livestock farms is not due to antimicrobial usage alone

Gut to lung translocation and antibiotic mediated selection shape the dynamics of Pseudomonas aeruginosa in an ICU patient

Mixed strain pathogen populations accelerate the evolution of antibiotic resistance in patients

Drivers of methicillin-resistant Staphylococcus aureus (MRSA) lineage replacement in China

Genomic diversity affects the accuracy of bacterial single-nucleotide polymorphism–calling pipelines

Comparison of long-read sequencing technologies in the hybrid assembly of complex bacterial genomes

The evolution of colistin resistance increases bacterial resistance to host antimicrobial peptides and virulence

Pre-existing chromosomal polymorphisms in pathogenic E. coli potentiate the evolution of resistance to a last-resort antibiotic

Null models for gene enrichment in plasmids

Enterobacterales plasmid sharing amongst human bloodstream infections, livestock, wastewater, and waterway niches in Oxfordshire, UK

The impact of sequencing depth on the inferred taxonomic composition and AMR gene content of metagenomic samples

Correction to: Whole genome sequencing Mycobacterium tuberculosis directly from sputum identifies more genetic diversity than sequencing from culture

The phylogenetic range of bacterial and viral pathogens of vertebrates

From Theory to Practice: Translating Whole-Genome Sequencing (WGS) into the Clinic

Restriction-modification systems have shaped the evolution and distribution of plasmids across bacteria

Electronic application to improve management of infections in low-income neonatal units: pilot implementation of the NeoTree beta app in a public sector hospital in Zimbabwe

Role of mobile genetic elements in the global dissemination of the carbapenem resistance gene bla NDM

Modelling microbiome recovery after antibiotics using a stability landscape framework

Portable sequencing, genomic data, and scale in global emerging infectious disease surveillance

Children With Cystic Fibrosis Are Infected With Multiple Subpopulations of Mycobacterium abscessus With Different Antimicrobial Resistance Profiles

Regulatory fine-tuning of mcr-1 increases bacterial fitness and stabilises antibiotic resistance in agricultural settings

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