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Inferences from tip‐calibrated phylogenies: a review and a practical guide

Molecular ecology, 2016-05, Vol.25 (9), p.1911-1924

2016

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tipdatingbeast: an r package to assist the implementation of phylogenetic tip‐dating tests using beast

Molecular ecology resources, 2017-07, Vol.17 (4), p.608-613

2017

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The global distribution and spread of the mobilized colistin resistance gene mcr-1

Nature communications, 2018-03, Vol.9 (1), p.1179-9, Article 1179

2018

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Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain

Nature communications, 2015-05, Vol.6 (1), p.7119-7119, Article 7119

2015

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Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history

Scientific reports, 2021-10, Vol.11 (1), p.21280-21280, Article 21280

2021

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Impact of HIV co-infection on the evolution and transmission of multidrug-resistant tuberculosis

eLife, 2016-08, Vol.5

2016

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Improved calibration of the human mitochondrial clock using ancient genomes

Molecular biology and evolution, 2014-10, Vol.31 (10), p.2780-2792

2014

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Long-distance wind-dispersal of spores in a fungal plant pathogen: estimation of anisotropic dispersal kernels from an extensive field experiment

PloS one, 2014-08, Vol.9 (8), p.e103225-e103225

2014

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Coexistence of Multiple Endemic and Pandemic Lineages of the Rice Blast Pathogen

mBio, 2018-04, Vol.9 (2)

2018

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Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history

Nature communications, 2023-07, Vol.14 (1), p.4306-4306

2023

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First historical genome of a crop bacterial pathogen from herbarium specimen: Insights into citrus canker emergence

PLoS pathogens, 2021-07, Vol.17 (7), p.e1009714-e1009714

2021

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Contrasting genetic diversity and structure among Malagasy Ralstonia pseudosolanacearum phylotype I populations inferred from an optimized Multilocus Variable Number of Tandem Repeat Analysis scheme

PloS one, 2020-12, Vol.15 (12), p.e0242846-e0242846

2020

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Development and comparative validation of genomic-driven PCR-based assays to detect Xanthomonas citri pv. citri in citrus plants

BMC microbiology, 2020-10, Vol.20 (1), p.296-13, Article 296

2020

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Acquisition and evolution of SXT-R391 integrative conjugative elements in the seventh-pandemic Vibrio cholerae lineage

mBio, 2014-08, Vol.5 (4)

2014

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Molecular Epidemiology of Bacterial Wilt in the Madagascar Highlands Caused by Andean (Phylotype IIB-1) and African (Phylotype III) Brown Rot Strains of the Ralstonia solanacearum Species Complex

Frontiers in plant science, 2018-01, Vol.8, p.2258-2258

2018

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Emergence and spread of Mycobacterium ulcerans at different geographic scales

Microbiology spectrum, 2024-03, Vol.12 (4), p.e0382723-e0382723

2024

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Population structure, connectivity, and demographic history of an apex marine predator, the bull shark Carcharhinus leucas

Ecology and evolution, 2019-12, Vol.9 (23), p.12980-13000

2019

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Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France

Communications biology, 2023-01, Vol.6 (1), p.103-13, Article 103

2023

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First report of Odontoglossum ringspot virus in Vanilla (Orchidaceae) in Madagascar

Plant disease, 2023-04, Vol.107 (4), p.1250

2023

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Time‐calibrated genomic evolution of a monomorphic bacterium during its establishment as an endemic crop pathogen

Molecular ecology, 2021-04, Vol.30 (8), p.1823-1835

2021

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Recent Asian origin of chytrid fungi causing global amphibian declines

Science (American Association for the Advancement of Science), 2018-05, Vol.360 (6389), p.621-627

2018

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Phylostems: a new graphical tool to investigate temporal signal of heterochronous sequences datasets

Bioinformatics advances, 2023, Vol.3 (1), p.vbad026-vbad026

2023

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Genomic Diversity and Recombination among Xylella fastidiosa Subspecies

Applied and environmental microbiology, 2019-07, Vol.85 (13)

2019

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Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements

Molecular ecology, 2017-04, Vol.26 (7), p.2131-2149

2017

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Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

Annual review of phytopathology, 2016-08, Vol.54 (1), p.163-187

2016

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Inferences from tip‐calibrated phylogenies: a review and a practical guide

tipdatingbeast: an r package to assist the implementation of phylogenetic tip‐dating tests using beast

The global distribution and spread of the mobilized colistin resistance gene mcr-1

Four decades of transmission of a multidrug-resistant Mycobacterium tuberculosis outbreak strain

Contribution of historical herbarium small RNAs to the reconstruction of a cassava mosaic geminivirus evolutionary history

Impact of HIV co-infection on the evolution and transmission of multidrug-resistant tuberculosis

Improved calibration of the human mitochondrial clock using ancient genomes

Long-distance wind-dispersal of spores in a fungal plant pathogen: estimation of anisotropic dispersal kernels from an extensive field experiment

Coexistence of Multiple Endemic and Pandemic Lineages of the Rice Blast Pathogen

Herbarium specimen sequencing allows precise dating of Xanthomonas citri pv. citri diversification history

First historical genome of a crop bacterial pathogen from herbarium specimen: Insights into citrus canker emergence

Contrasting genetic diversity and structure among Malagasy Ralstonia pseudosolanacearum phylotype I populations inferred from an optimized Multilocus Variable Number of Tandem Repeat Analysis scheme

Development and comparative validation of genomic-driven PCR-based assays to detect Xanthomonas citri pv. citri in citrus plants

Acquisition and evolution of SXT-R391 integrative conjugative elements in the seventh-pandemic Vibrio cholerae lineage

Molecular Epidemiology of Bacterial Wilt in the Madagascar Highlands Caused by Andean (Phylotype IIB-1) and African (Phylotype III) Brown Rot Strains of the Ralstonia solanacearum Species Complex

Emergence and spread of Mycobacterium ulcerans at different geographic scales

Population structure, connectivity, and demographic history of an apex marine predator, the bull shark Carcharhinus leucas

Suspicions of two bridgehead invasions of Xylella fastidiosa subsp. multiplex in France

First report of Odontoglossum ringspot virus in Vanilla (Orchidaceae) in Madagascar

Time‐calibrated genomic evolution of a monomorphic bacterium during its establishment as an endemic crop pathogen

Recent Asian origin of chytrid fungi causing global amphibian declines

Phylostems: a new graphical tool to investigate temporal signal of heterochronous sequences datasets

Genomic Diversity and Recombination among Xylella fastidiosa Subspecies

Adaptation of genetically monomorphic bacteria: evolution of copper resistance through multiple horizontal gene transfers of complex and versatile mobile genetic elements

Using Ecology, Physiology, and Genomics to Understand Host Specificity in Xanthomonas

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