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Inferring cellular networks--a review

BMC bioinformatics, 2007-09, Vol.8 Suppl 6 (S6), p.S5-S5, Article S5

2007

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Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1

Nature communications, 2020-01, Vol.11 (1), p.402-402, Article 402

2020

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From hype to reality: data science enabling personalized medicine

BMC medicine, 2018-08, Vol.16 (1), p.150-150, Article 150

2018

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Virus-specific memory T cell responses unmasked by immune checkpoint blockade cause hepatitis

Nature communications, 2021-03, Vol.12 (1), p.1439-15, Article 1439

2021

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siPools: highly complex but accurately defined siRNA pools eliminate off-target effects

Nucleic acids research, 2014-07, Vol.42 (12), p.8049-8061

2014

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Comparison of Gene Expression Patterns Between Mouse Models of Nonalcoholic Fatty Liver Disease and Liver Tissues From Patients

Gastroenterology (New York, N.Y. 1943), 2016-09, Vol.151 (3), p.513-525.e0

2016

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TIGIT+ iTregs elicited by human regulatory macrophages control T cell immunity

Nature communications, 2018-07, Vol.9 (1), p.2858-18, Article 2858

2018

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Wnt secretion is required to maintain high levels of Wnt activity in colon cancer cells

Nature communications, 2013-10, Vol.4 (1), p.2610-2610, Article 2610

2013

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Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?

PLoS computational biology, 2021-12, Vol.17 (12), p.e1009055-e1009055

2021

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Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

Microbiome, 2016-06, Vol.4 (1), p.28-28, Article 28

2016

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Taming numerical imprecision by adapting the KL divergence to negative probabilities

Statistics and computing, 2024-10, Vol.34 (5), Article 168

2024

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State-of-the art data normalization methods improve NMR-based metabolomic analysis

Metabolomics, 2012-06, Vol.8 (Suppl 1), p.146-160

2012

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Transcriptional Profiles of CD133+ and CD133- Glioblastoma-Derived Cancer Stem Cell Lines Suggest Different Cells of Origin

Cancer research (Chicago, Ill.), 2010-03, Vol.70 (5), p.2030-2040

2010

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Gene expression profiling reveals a close relationship between follicular lymphoma grade 3A and 3B, but distinct profiles of follicular lymphoma grade 1 and 2

Haematologica (Roma), 2018-07, Vol.103 (7), p.1182-1190

2018

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Restricting datasets to classifiable samples augments discovery of immune disease biomarkers

Nature communications, 2024-06, Vol.15 (1), p.5417-21, Article 5417

2024

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Gene expression-based outcome prediction in advanced stage classical Hodgkin lymphoma treated with BEACOPP

Leukemia, 2021-12, Vol.35 (12), p.3589-3593

2021

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Cooperative STAT/NF-κB signaling regulates lymphoma metabolic reprogramming and aberrant GOT2 expression

Nature communications, 2018-04, Vol.9 (1), p.1514-14, Article 1514

2018

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Author Correction: Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1

Nature communications, 2020-02, Vol.11 (1), p.1139-1139, Article 1139

2020

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Gene Expression Signatures for Tumor Progression, Tumor Subtype, and Tumor Thickness in Laser-Microdissected Melanoma Tissues

Clinical cancer research, 2007-02, Vol.13 (3), p.806-815

2007

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Finding disease specific alterations in the co-expression of genes

Bioinformatics, 2004-08, Vol.20 (suppl-1), p.i194-i199

2004

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Deep sequencing of MYC DNA-binding sites in Burkitt lymphoma

PloS one, 2011-11, Vol.6 (11), p.e26837-e26837

2011

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Evaluation of radio-immunotherapy sequence on immunological responses and clinical outcomes in patients with melanoma brain metastases (ELEKTRA)

Oncoimmunology, 2022-12, Vol.11 (1), p.2066609-2066609

2022

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Platform independent protein-based cell-of-origin subtyping of diffuse large B-cell lymphoma in formalin-fixed paraffin-embedded tissue

Scientific reports, 2020-05, Vol.10 (1), p.7876-7876, Article 7876

2020

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Inferring cellular networks--a review

Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1

From hype to reality: data science enabling personalized medicine

Virus-specific memory T cell responses unmasked by immune checkpoint blockade cause hepatitis

siPools: highly complex but accurately defined siRNA pools eliminate off-target effects

Comparison of Gene Expression Patterns Between Mouse Models of Nonalcoholic Fatty Liver Disease and Liver Tissues From Patients

TIGIT+ iTregs elicited by human regulatory macrophages control T cell immunity

Wnt secretion is required to maintain high levels of Wnt activity in colon cancer cells

A novel lymphoma-associated macrophage interaction signature (LAMIS) provides robust risk prognostication in diffuse large B-cell lymphoma clinical trial cohorts of the DSHNHL

Conditional prediction of consecutive tumor evolution using cancer progression models: What genotype comes next?

Adjusting microbiome profiles for differences in microbial load by spike-in bacteria

Taming numerical imprecision by adapting the KL divergence to negative probabilities

State-of-the art data normalization methods improve NMR-based metabolomic analysis

Transcriptional Profiles of CD133+ and CD133- Glioblastoma-Derived Cancer Stem Cell Lines Suggest Different Cells of Origin

Gene expression profiling reveals a close relationship between follicular lymphoma grade 3A and 3B, but distinct profiles of follicular lymphoma grade 1 and 2

Restricting datasets to classifiable samples augments discovery of immune disease biomarkers

Translocations activating IRF4 identify a subtype of germinal center-derived B-cell lymphoma affecting predominantly children and young adults

Gene expression-based outcome prediction in advanced stage classical Hodgkin lymphoma treated with BEACOPP

Cooperative STAT/NF-κB signaling regulates lymphoma metabolic reprogramming and aberrant GOT2 expression

Author Correction: Mechanisms governing the pioneering and redistribution capabilities of the non-classical pioneer PU.1

Gene Expression Signatures for Tumor Progression, Tumor Subtype, and Tumor Thickness in Laser-Microdissected Melanoma Tissues

Finding disease specific alterations in the co-expression of genes

Deep sequencing of MYC DNA-binding sites in Burkitt lymphoma

Evaluation of radio-immunotherapy sequence on immunological responses and clinical outcomes in patients with melanoma brain metastases (ELEKTRA)

Platform independent protein-based cell-of-origin subtyping of diffuse large B-cell lymphoma in formalin-fixed paraffin-embedded tissue

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