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PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

Bioinformatics, 2010-07, Vol.26 (13), p.1608-1615

2010

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Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

Nature communications, 2019-06, Vol.10 (1), p.2750-12, Article 2750

2019

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Clonality inference in multiple tumor samples using phylogeny

Bioinformatics, 2015-05, Vol.31 (9), p.1349-1356

2015

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SCALCE: boosting sequence compression algorithms using locally consistent encoding

Bioinformatics, 2012-12, Vol.28 (23), p.3051-3057

2012

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Tumor origin detection with tissue-specific miRNA and DNA methylation markers

Bioinformatics, 2018-02, Vol.34 (3), p.398-406

2018

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Sketching algorithms for genomic data analysis and querying in a secure enclave

Nature methods, 2020-03, Vol.17 (3), p.295

2020

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DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function

Bioinformatics, 2018-06, Vol.34 (11), p.1953-1956

2018

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Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data

Bioinformatics (Oxford, England), 2017-05, Vol.33 (10), p.1545-1553

2017

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ARCS: scaffolding genome drafts with linked reads

Bioinformatics, 2018-03, Vol.34 (5), p.725-731

2018

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Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

Genome Research, 2009-07, Vol.19 (7), p.1270-1278

2009

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COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge

Bioinformatics (Oxford, England), 2017-03, Vol.33 (6), p.791-798

2017

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mrsFAST: a cache-oblivious algorithm for short-read mapping

Nature methods, 2010-08, Vol.7 (8), p.576

2010

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Personalized copy number and segmental duplication maps using next-generation sequencing

Nature genetics, 2009-10, Vol.41 (10), p.1061-1067

2009

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The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression

Nature communications, 2016-09, Vol.7 (1), p.12791-13, Article 12791

2016

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Accurate self-correction of errors in long reads using de Bruijn graphs

Bioinformatics (Oxford, England), 2017-03, Vol.33 (6), p.799-806

2017

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Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

Nature communications, 2018-02, Vol.9 (1), p.828-11, Article 828

2018

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CoLoRMap: Correcting Long Reads by Mapping short reads

Bioinformatics (Oxford, England), 2016-09, Vol.32 (17), p.i545-i551

2016

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deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

PLoS computational biology, 2011-05, Vol.7 (5), p.e1001138-e1001138

2011

Volltextzugriff (PDF)

Comparison of high-throughput sequencing data compression tools

Nature methods, 2016-12, Vol.13 (12), p.1005

2016

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The Proteogenomic Landscape of Curable Prostate Cancer

Cancer cell, 2019-03, Vol.35 (3), p.414-427.e6

2019

Volltextzugriff (PDF)

Predict drug permeability to blood-brain-barrier from clinical phenotypes: drug side effects and drug indications

Bioinformatics (Oxford, England), 2017-03, Vol.33 (6), p.901-908

2017

Volltextzugriff (PDF)

WeSME: uncovering mutual exclusivity of cancer drivers and beyond

Bioinformatics (Oxford, England), 2017-03, Vol.33 (6), p.814-821

2017

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DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data

Bioinformatics, 2018-01, Vol.34 (1), p.139-146

2018

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Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

Genome Research, 2008-04, Vol.18 (4), p.571-584

2008

Volltextzugriff (PDF)

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data

Bioinformatics, 2018-01, Vol.34 (1), p.163-170

2018

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PSORTb 3.0: improved protein subcellular localization prediction with refined localization subcategories and predictive capabilities for all prokaryotes

Integrative inference of subclonal tumour evolution from single-cell and bulk sequencing data

Clonality inference in multiple tumor samples using phylogeny

SCALCE: boosting sequence compression algorithms using locally consistent encoding

Tumor origin detection with tissue-specific miRNA and DNA methylation markers

Sketching algorithms for genomic data analysis and querying in a secure enclave

DincRNA: a comprehensive web-based bioinformatics toolkit for exploring disease associations and ncRNA function

Sparse network modeling and metscape-based visualization methods for the analysis of large-scale metabolomics data

ARCS: scaffolding genome drafts with linked reads

Combinatorial algorithms for structural variation detection in high-throughput sequenced genomes

COCACOLA: binning metagenomic contigs using sequence COmposition, read CoverAge, CO-alignment and paired-end read LinkAge

mrsFAST: a cache-oblivious algorithm for short-read mapping

Personalized copy number and segmental duplication maps using next-generation sequencing

The lncRNA landscape of breast cancer reveals a role for DSCAM-AS1 in breast cancer progression

Accurate self-correction of errors in long reads using de Bruijn graphs

Allelic decomposition and exact genotyping of highly polymorphic and structurally variant genes

CoLoRMap: Correcting Long Reads by Mapping short reads

deFuse: an algorithm for gene fusion discovery in tumor RNA-Seq data

Comparison of high-throughput sequencing data compression tools

The Proteogenomic Landscape of Curable Prostate Cancer

Predict drug permeability to blood-brain-barrier from clinical phenotypes: drug side effects and drug indications

WeSME: uncovering mutual exclusivity of cancer drivers and beyond

DIMM-SC: a Dirichlet mixture model for clustering droplet-based single cell transcriptomic data

Comparative analysis of the small RNA transcriptomes of Pinus contorta and Oryza sativa

QUENTIN: reconstruction of disease transmissions from viral quasispecies genomic data

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