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Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices

Biosensors & bioelectronics, 2015-01, Vol.63, p.218-231

2015

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Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

Microbiome, 2019-05, Vol.7 (1), p.75-18, Article 75

2019

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Consistent estimation of Gibbs energy using component contributions

PLoS computational biology, 2013-07, Vol.9 (7), p.e1003098-e1003098

2013

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Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

Nature biotechnology, 2017-01, Vol.35 (1), p.81-89

2017

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Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

Nature biotechnology, 2023-09, Vol.41 (9), p.1320-1331

2023

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Automated microfluidic cell culture of stem cell derived dopaminergic neurons

Scientific reports, 2019-02, Vol.9 (1), p.1796-1796, Article 1796

2019

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Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage

PloS one, 2012-09, Vol.7 (9), p.e45635-e45635

2012

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Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks

PLoS computational biology, 2016-11, Vol.12 (11), p.e1004999-e1004999

2016

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A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines

PLoS computational biology, 2017-08, Vol.13 (8), p.e1005698

2017

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Differentiation of neuroepithelial stem cells into functional dopaminergic neurons in 3D microfluidic cell culture

Lab on a chip, 2015-06, Vol.15 (11), p.2419-2428

2015

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A systems biology approach to studying the role of microbes in human health

Current opinion in biotechnology, 2013-02, Vol.24 (1), p.4-12

2013

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Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

PLoS computational biology, 2009-03, Vol.5 (3), p.e1000312-e1000312

2009

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Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

Molecular systems biology, 2020-05, Vol.16 (5), p.e8982-n/a

2020

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ReconMap: an interactive visualization of human metabolism

Bioinformatics (Oxford, England), 2017-02, Vol.33 (4), p.605-607

2017

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3D Cultures of Parkinson's Disease‐Specific Dopaminergic Neurons for High Content Phenotyping and Drug Testing

Advanced science, 2019-01, Vol.6 (1), p.1800927-n/a

2019

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Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer

BMC bioinformatics, 2019-04, Vol.20 (Suppl 4), p.140-140, Article 140

2019

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A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm

PloS one, 2012-04, Vol.7 (4), p.e34337

2012

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Monitoring metabolites consumption and secretion in cultured cells using ultra-performance liquid chromatography quadrupole–time of flight mass spectrometry (UPLC–Q–ToF-MS)

Analytical and bioanalytical chemistry, 2012-01, Vol.402 (3), p.1183-1198

2012

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Prediction of intracellular metabolic states from extracellular metabolomic data

Metabolomics, 2015-06, Vol.11 (3), p.603-619

2015

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Identification of metabolites reproducibly associated with Parkinson’s Disease via meta-analysis and computational modelling

NPJ Parkinson's Disease, 2024-06, Vol.10 (1), p.126-17, Article 126

2024

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von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models

Bioinformatics, 2011-01, Vol.27 (1), p.142-143

2011

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Modeling the effects of commonly used drugs on human metabolism

The FEBS journal, 2015-01, Vol.282 (2), p.297-317

2015

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Local convergence of the Levenberg–Marquardt method under Hölder metric subregularity

Advances in computational mathematics, 2019-12, Vol.45 (5-6), p.2771-2806

2019

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MetaboTools: A Comprehensive Toolbox for Analysis of Genome-Scale Metabolic Models

Frontiers in physiology, 2016-08, Vol.7, p.327-327

2016

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Advantages and challenges of microfluidic cell culture in polydimethylsiloxane devices

Systematic assessment of secondary bile acid metabolism in gut microbes reveals distinct metabolic capabilities in inflammatory bowel disease

Consistent estimation of Gibbs energy using component contributions

Generation of genome-scale metabolic reconstructions for 773 members of the human gut microbiota

Genome-scale metabolic reconstruction of 7,302 human microorganisms for personalized medicine

The Virtual Metabolic Human database: integrating human and gut microbiome metabolism with nutrition and disease

Automated microfluidic cell culture of stem cell derived dopaminergic neurons

Multiscale modeling of metabolism and macromolecular synthesis in E. coli and its application to the evolution of codon usage

Identification of Conserved Moieties in Metabolic Networks by Graph Theoretical Analysis of Atom Transition Networks

A systems approach reveals distinct metabolic strategies among the NCI-60 cancer cell lines

Differentiation of neuroepithelial stem cells into functional dopaminergic neurons in 3D microfluidic cell culture

A systems biology approach to studying the role of microbes in human health

Genome-scale reconstruction of Escherichia coli's transcriptional and translational machinery: a knowledge base, its mathematical formulation, and its functional characterization

Personalized whole‐body models integrate metabolism, physiology, and the gut microbiome

ReconMap: an interactive visualization of human metabolism

3D Cultures of Parkinson's Disease‐Specific Dopaminergic Neurons for High Content Phenotyping and Drug Testing

Metabolic and signalling network maps integration: application to cross-talk studies and omics data analysis in cancer

A systems biology approach to drug targets in Pseudomonas aeruginosa biofilm

Monitoring metabolites consumption and secretion in cultured cells using ultra-performance liquid chromatography quadrupole–time of flight mass spectrometry (UPLC–Q–ToF-MS)

Prediction of intracellular metabolic states from extracellular metabolomic data

Identification of metabolites reproducibly associated with Parkinson’s Disease via meta-analysis and computational modelling

von Bertalanffy 1.0: a COBRA toolbox extension to thermodynamically constrain metabolic models

Modeling the effects of commonly used drugs on human metabolism

Local convergence of the Levenberg–Marquardt method under Hölder metric subregularity

MetaboTools: A Comprehensive Toolbox for Analysis of Genome-Scale Metabolic Models

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