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Origin and evolution of spliceosomal introns

Biology direct, 2012-04, Vol.7 (1), p.11-11, Article 11

2012

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A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes

PLoS computational biology, 2011-09, Vol.7 (9), p.e1002150-e1002150

2011

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Editorial: Novel applications of ONT technologies in genomics and transcriptomics

Frontiers in genetics, 2024, Vol.15, p.1384584-1384584

2024

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Importance of Genetic Diversity Assessment in Crop Plants and Its Recent Advances: An Overview of Its Analytical Perspectives

Genetics Research International, 2015-01, Vol.2015, p.23-36

2015

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Exploring background mutational processes to decipher cancer genetic heterogeneity

Nucleic acids research, 2017-07, Vol.45 (W1), p.W514-W522

2017

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The 29-nucleotide deletion in SARS-CoV: truncated versions of ORF8 are under purifying selection

BMC genomics, 2023-07, Vol.24 (1), p.387-387, Article 387

2023

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Properties and Mechanisms of Deletions, Insertions, and Substitutions in the Evolutionary History of SARS-CoV-2

International journal of molecular sciences, 2024-04, Vol.25 (7), p.3696

2024

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AID and APOBECs as Multifaceted Intrinsic Virus-Restricting Factors: Emerging Concepts in the Light of COVID-19

Frontiers in immunology, 2021-07, Vol.12, p.690416-690416

2021

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Analysis of Stop Codons within Prokaryotic Protein-Coding Genes Suggests Frequent Readthrough Events

International journal of molecular sciences, 2021-02, Vol.22 (4), p.1876

2021

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Paraoxonase-1 as a Cardiovascular Biomarker in Caribbean Hispanic Patients Treated with Clopidogrel: Abundance and Functionality

International journal of molecular sciences, 2024-10, Vol.25 (19), p.10657

2024

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Evolution of protein domain promiscuity in eukaryotes

Genome Research, 2008-03, Vol.18 (3), p.449-461

2008

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Low-Density Lipoprotein Receptor (LDLR) Is Involved in Internalization of Lentiviral Particles Pseudotyped with SARS-CoV-2 Spike Protein in Ocular Cells

International journal of molecular sciences, 2023-07, Vol.24 (14), p.11860

2023

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Crossing fitness valleys via double substitutions within codons

BMC biology, 2019-12, Vol.17 (1), p.105-105, Article 105

2019

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No evidence for widespread positive selection on double substitutions within codons in primates and yeasts

Frontiers in genetics, 2022-09, Vol.13, p.991249-991249

2022

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The Functional Consequences of the Novel Ribosomal Pausing Site in SARS-CoV-2 Spike Glycoprotein RNA

International journal of molecular sciences, 2021-06, Vol.22 (12), p.6490

2021

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A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements

PloS one, 2008-06, Vol.3 (6), p.e2521-e2521

2008

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AID/APOBEC cytosine deaminase induces genome-wide kataegis

Biology direct, 2012-12, Vol.7 (1), p.47; discussion 47-47; discussion 47, Article 47

2012

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Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase

Nature Immunology, 2007-06, Vol.8 (6), p.647-656

2007

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DNA polymerase ε and δ variants drive mutagenesis in polypurine tracts in human tumors

Cell reports (Cambridge), 2024-01, Vol.43 (1), p.113655-113655, Article 113655

2024

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Genome-wide mutation avalanches induced in diploid yeast cells by a base analog or an APOBEC deaminase

PLoS genetics, 2013-09, Vol.9 (9), p.e1003736

2013

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Disruption of Transcriptional Coactivator Sub1 Leads to Genome-Wide Re-distribution of Clustered Mutations Induced by APOBEC in Active Yeast Genes

PLoS genetics, 2015-05, Vol.11 (5), p.e1005217-e1005217

2015

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Phylogenetic analysis of the metazoan carotenoid oxygenase superfamily: a new ancestral gene assemblage of BCO-like (BCOL) proteins

Scientific reports, 2017-10, Vol.7 (1), p.13192-12, Article 13192

2017

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Palmitoylation of Metazoan Carotenoid Oxygenases

Molecules (Basel, Switzerland), 2020-04, Vol.25 (8), p.1942

2020

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Mutational signatures and mutable motifs in cancer genomes

Briefings in bioinformatics, 2017-05, Vol.19 (6), p.1085-1101

2017

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Cutting Edge: DGYW/WRCH Is a Better Predictor of Mutability at G:C Bases in Ig Hypermutation Than the Widely Accepted RGYW/WRCY Motif and Probably Reflects a Two-Step Activation-Induced Cytidine Deaminase-Triggered Process

The Journal of immunology (1950), 2004-03, Vol.172 (6), p.3382-3384

2004

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Origin and evolution of spliceosomal introns

A detailed history of intron-rich eukaryotic ancestors inferred from a global survey of 100 complete genomes

Editorial: Novel applications of ONT technologies in genomics and transcriptomics

Importance of Genetic Diversity Assessment in Crop Plants and Its Recent Advances: An Overview of Its Analytical Perspectives

Exploring background mutational processes to decipher cancer genetic heterogeneity

The 29-nucleotide deletion in SARS-CoV: truncated versions of ORF8 are under purifying selection

Properties and Mechanisms of Deletions, Insertions, and Substitutions in the Evolutionary History of SARS-CoV-2

AID and APOBECs as Multifaceted Intrinsic Virus-Restricting Factors: Emerging Concepts in the Light of COVID-19

Analysis of Stop Codons within Prokaryotic Protein-Coding Genes Suggests Frequent Readthrough Events

Paraoxonase-1 as a Cardiovascular Biomarker in Caribbean Hispanic Patients Treated with Clopidogrel: Abundance and Functionality

Evolution of protein domain promiscuity in eukaryotes

Low-Density Lipoprotein Receptor (LDLR) Is Involved in Internalization of Lentiviral Particles Pseudotyped with SARS-CoV-2 Spike Protein in Ocular Cells

Crossing fitness valleys via double substitutions within codons

No evidence for widespread positive selection on double substitutions within codons in primates and yeasts

The Functional Consequences of the Novel Ribosomal Pausing Site in SARS-CoV-2 Spike Glycoprotein RNA

A dual origin of the Xist gene from a protein-coding gene and a set of transposable elements

AID/APOBEC cytosine deaminase induces genome-wide kataegis

Evolution and diversification of lamprey antigen receptors: evidence for involvement of an AID-APOBEC family cytosine deaminase

DNA polymerase ε and δ variants drive mutagenesis in polypurine tracts in human tumors

Genome-wide mutation avalanches induced in diploid yeast cells by a base analog or an APOBEC deaminase

Disruption of Transcriptional Coactivator Sub1 Leads to Genome-Wide Re-distribution of Clustered Mutations Induced by APOBEC in Active Yeast Genes

Phylogenetic analysis of the metazoan carotenoid oxygenase superfamily: a new ancestral gene assemblage of BCO-like (BCOL) proteins

Palmitoylation of Metazoan Carotenoid Oxygenases

Mutational signatures and mutable motifs in cancer genomes

Cutting Edge: DGYW/WRCH Is a Better Predictor of Mutability at G:C Bases in Ig Hypermutation Than the Widely Accepted RGYW/WRCY Motif and Probably Reflects a Two-Step Activation-Induced Cytidine Deaminase-Triggered Process

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