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Transfer learning for drug–target interaction prediction

Bioinformatics (Oxford, England), 2023-06, Vol.39 (Supplement_1), p.i103-i110

2023

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ProFAB—open protein functional annotation benchmark

Briefings in bioinformatics, 2023-03, Vol.24 (2)

2023

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Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage

Nature communications, 2024-01, Vol.15 (1), p.269-269, Article 269

2024

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Crowdsourced mapping of unexplored target space of kinase inhibitors

Nature communications, 2021-06, Vol.12 (1), p.3307-18, Article 3307

2021

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FAIR adoption, assessment and challenges at UniProt

Scientific data, 2019-09, Vol.6 (1), p.175-4, Article 175

2019

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DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

Scientific reports, 2019-05, Vol.9 (1), p.7344, Article 7344

2019

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Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

Briefings in bioinformatics, 2019-09, Vol.20 (5), p.1878-1912

2019

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ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

BMC bioinformatics, 2018-09, Vol.19 (1), p.334-334, Article 334

2018

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CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations

Nucleic acids research, 2021-09, Vol.49 (16), p.e96

2021

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DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

Chemical science (Cambridge), 2020-03, Vol.11 (9), p.2531-2557

2020

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SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins

Bioinformatics, 2022-09, Vol.38 (17), p.4226-4229

2022

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iBioProVis: interactive visualization and analysis of compound bioactivity space

Bioinformatics, 2020-08, Vol.36 (14), p.4227-4230

2020

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iBioProVis: interactive visualization and analysis of compound bioactivity space

Bioinformatics, 2020-11, Vol.36 (17), p.4674-4674

2020

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Abstract 5235: In vitro validation of drug-target interactions revealed in silico by Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning (CROssBAR) in HCC

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.5235-5235

2020

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DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c9sc03414e

Chemical science (Cambridge), 2020-01, Vol.11 (9), p.2531-2557

2020

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Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools

Journal of gastrointestinal cancer, 2021-12, Vol.52 (4), p.1266-1276

2021

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Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl

Frontiers in molecular biosciences, 2021-06, Vol.8, p.658906-658906

2021

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Large‐scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants

Proteins, structure, function, and bioinformatics, 2018-02, Vol.86 (2), p.135-151

2018

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Protective effects of caffeic acid phenethyl ester on the dose‐dependent acute nephrotoxicity with paraquat in a rat model

Environmental toxicology, 2015-03, Vol.30 (3), p.375-381

2015

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Antioxidative and Anti-inflammatory Effect of Thymoquinone in an Acute Pseudomonas Prostatitis Rat Model

Urologia internationalis, 2013-01, Vol.91 (4), p.474-481

2013

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Caffeic acid phenethyl ester (CAPE) protects against acute urogenital injury following pneumoperitoneum in the rat

Renal failure, 2014-02, Vol.36 (1), p.98-103

2014

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Isotretinoin treatment in patients with acne vulgaris: does it impact muscle strength, fatigue, and endurance?

Cutis (New York, N.Y.), 2015-07, Vol.96 (1), p.33-36

2015

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A practice report of bladder injuries due to gunshot wounds in Syrian refugees

Ulusal travma ve acil cerrahi dergisi = Turkish journal of trauma & emergency surgery : TJTES, 2014-09, Vol.20 (5), p.371

2014

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Unsupervised identification of redundant domain entries in InterPro database using clustering techniques

Proceedings of the 6th ACM Conference on Bioinformatics, Computational Biology and Health Informatics, 2015, p.505-506

2015

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Transfer learning for drug–target interaction prediction

ProFAB—open protein functional annotation benchmark

Compartments in medulloblastoma with extensive nodularity are connected through differentiation along the granular precursor lineage

Crowdsourced mapping of unexplored target space of kinase inhibitors

FAIR adoption, assessment and challenges at UniProt

DEEPred: Automated Protein Function Prediction with Multi-task Feed-forward Deep Neural Networks

Recent applications of deep learning and machine intelligence on in silico drug discovery: methods, tools and databases

ECPred: a tool for the prediction of the enzymatic functions of protein sequences based on the EC nomenclature

CROssBAR: comprehensive resource of biomedical relations with knowledge graph representations

DEEPScreen: high performance drug-target interaction prediction with convolutional neural networks using 2-D structural compound representations

SLPred: a multi-view subcellular localization prediction tool for multi-location human proteins

iBioProVis: interactive visualization and analysis of compound bioactivity space

iBioProVis: interactive visualization and analysis of compound bioactivity space

Abstract 5235: In vitro validation of drug-target interactions revealed in silico by Comprehensive Resource of Biomedical Relations with Network Representations and Deep Learning (CROssBAR) in HCC

DEEPScreen: high performance drug–target interaction prediction with convolutional neural networks using 2-D structural compound representations† †Electronic supplementary information (ESI) available. See DOI: 10.1039/c9sc03414e

Data Centric Molecular Analysis and Evaluation of Hepatocellular Carcinoma Therapeutics Using Machine Intelligence-Based Tools

Predicting the Specificity- Determining Positions of Receptor Tyrosine Kinase Axl

Large‐scale automated function prediction of protein sequences and an experimental case study validation on PTEN transcript variants

Protective effects of caffeic acid phenethyl ester on the dose‐dependent acute nephrotoxicity with paraquat in a rat model

Antioxidative and Anti-inflammatory Effect of Thymoquinone in an Acute Pseudomonas Prostatitis Rat Model

Caffeic acid phenethyl ester (CAPE) protects against acute urogenital injury following pneumoperitoneum in the rat

Isotretinoin treatment in patients with acne vulgaris: does it impact muscle strength, fatigue, and endurance?

A practice report of bladder injuries due to gunshot wounds in Syrian refugees

Unsupervised identification of redundant domain entries in InterPro database using clustering techniques

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