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The GEM mapper: fast, accurate and versatile alignment by filtration

Nature methods, 2012-12, Vol.9 (12), p.1185

2012

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Allelic Entropy and Times until Loss or Fixation of Neutral Polymorphisms

Genes, 2023-09, Vol.14 (9), p.1751

2023

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Transcriptome and genome sequencing uncovers functional variation in humans

Nature (London), 2013-09, Vol.501 (7468), p.506-511

2013

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KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes

PLoS genetics, 2024-04, Vol.20 (4), p.e1011184-e1011184

2024

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Fast computation and applications of genome mappability

PloS one, 2012-01, Vol.7 (1), p.e30377-e30377

2012

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Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence

The Plant journal : for cell and molecular biology, 2020-01, Vol.101 (2), p.455-472

2020

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Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

BMC genomics, 2021-03, Vol.22 (1), p.159-159, Article 159

2021

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Differential gene regulation underlies variation in melanic plumage coloration in the dark‐eyed junco (Junco hyemalis)

Molecular ecology, 2018-11, Vol.27 (22), p.4501-4515

2018

Volltextzugriff (PDF)

Bovine Derived in vitro Cultures Generate Heterogeneous Populations of Antigen Presenting Cells

Frontiers in immunology, 2019-03, Vol.10, p.612-612

2019

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Full genome sequencing of archived wild type and vaccine rinderpest virus isolates prior to their destruction

Scientific reports, 2020-04, Vol.10 (1), p.6563-6563, Article 6563

2020

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Mass Die-Off of Saiga Antelopes, Kazakhstan, 2015

Emerging infectious diseases, 2019-06, Vol.25 (6), p.1169-1176

2019

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Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid

PLoS pathogens, 2020-01, Vol.16 (1), p.e1008235-e1008235

2020

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SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data

Genes, 2019-07, Vol.10 (8), p.561

2019

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ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

BMC genomics, 2017-01, Vol.18 (1), p.7-7, Article 7

2017

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Pervasive Differential Splicing in Marek's Disease Virus can Discriminate CVI-988 Vaccine Strain from RB-1B Very Virulent Strain in Chicken Embryonic Fibroblasts

Viruses, 2020-03, Vol.12 (3), p.329

2020

Volltextzugriff (PDF)

Correction: Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid

PLoS pathogens, 2020-10, Vol.16 (10), p.e1009050-e1009050

2020

Volltextzugriff (PDF)

The Site Frequency/Dosage Spectrum of Autopolyploid Populations

Frontiers in genetics, 2018-10, Vol.9, p.480-480

2018

Volltextzugriff (PDF)

A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations

Viruses, 2020-10, Vol.12 (10), p.1187

2020

Volltextzugriff (PDF)

A more precise characterization of chaperonin substrates

Bioinformatics, 2010-07, Vol.26 (14), p.1685-1689

2010

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Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome

Viruses, 2018-04, Vol.10 (5), p.221

2018

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Mutagenesis Mapping of RNA Structures within the Foot-and-Mouth Disease Virus Genome Reveals Functional Elements Localized in the Polymerase (3D pol )-Encoding Region

mSphere, 2021-08, Vol.6 (4), p.e0001521

2021

Volltextzugriff (PDF)

A novel factor modulating X chromosome dosage compensation in Anopheles

Current biology, 2023-11, Vol.33 (21), p.4697-4703.e4

2023

Volltextzugriff (PDF)

Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host

Molecular biology and evolution, 2024-01, Vol.41 (1)

2024

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The GEM mapper: fast, accurate and versatile alignment by filtration

Allelic Entropy and Times until Loss or Fixation of Neutral Polymorphisms

Transcriptome and genome sequencing uncovers functional variation in humans

KmerAperture: Retaining k-mer synteny for alignment-free extraction of core and accessory differences between bacterial genomes

Fast computation and applications of genome mappability

Transposons played a major role in the diversification between the closely related almond and peach genomes: results from the almond genome sequence

Whole genome de novo sequencing and comparative genomic analyses suggests that Chlamydia psittaci strain 84/2334 should be reclassified as Chlamydia abortus species

Differential gene regulation underlies variation in melanic plumage coloration in the dark‐eyed junco (Junco hyemalis)

Bovine Derived in vitro Cultures Generate Heterogeneous Populations of Antigen Presenting Cells

Full genome sequencing of archived wild type and vaccine rinderpest virus isolates prior to their destruction

Mass Die-Off of Saiga Antelopes, Kazakhstan, 2015

Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid

SiNPle: Fast and Sensitive Variant Calling for Deep Sequencing Data

ChimPipe: accurate detection of fusion genes and transcription-induced chimeras from RNA-seq data

Pervasive Differential Splicing in Marek's Disease Virus can Discriminate CVI-988 Vaccine Strain from RB-1B Very Virulent Strain in Chicken Embryonic Fibroblasts

Correction: Pervasive within-host recombination and epistasis as major determinants of the molecular evolution of the foot-and-mouth disease virus capsid

The Site Frequency/Dosage Spectrum of Autopolyploid Populations

A Systematic Evaluation of High-Throughput Sequencing Approaches to Identify Low-Frequency Single Nucleotide Variants in Viral Populations

A more precise characterization of chaperonin substrates

Sequencing and Analysis of Lumpy Skin Disease Virus Whole Genomes Reveals a New Viral Subgroup in West and Central Africa

Within-Host Recombination in the Foot-and-Mouth Disease Virus Genome

Evidence for transcript networks composed of chimeric RNAs in human cells

Mutagenesis Mapping of RNA Structures within the Foot-and-Mouth Disease Virus Genome Reveals Functional Elements Localized in the Polymerase (3D pol )-Encoding Region

A novel factor modulating X chromosome dosage compensation in Anopheles

Inference of Infectious Disease Transmission through a Relaxed Bottleneck Using Multiple Genomes Per Host

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