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Whole Genome-Based Characterization of Listeria monocytogenes Isolates Recovered From the Food Chain in South Africa

Frontiers in microbiology, 2021-07, Vol.12, p.669287-669287

2021

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Resistance Sniffer: An online tool for prediction of drug resistance patterns of Mycobacterium tuberculosis isolates using next generation sequencing data

International journal of medical microbiology, 2020-02, Vol.310 (2), p.151399-151399, Article 151399

2020

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Universal Lineage-Independent Markers of Multidrug Resistance in Mycobacterium tuberculosis

Microorganisms (Basel), 2024-06, Vol.12 (7), p.1340

2024

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Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools

BMC bioinformatics, 2018-08, Vol.19 (1), p.309-309, Article 309

2018

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The Epistatic Landscape of Antibiotic Resistance of Different Clades of Mycobacterium tuberculosis

Antibiotics (Basel), 2021-07, Vol.10 (7), p.857

2021

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Genetic, Epigenetic and Phenotypic Diversity of Four Bacillus velezensis Strains Used for Plant Protection or as Probiotics

Frontiers in microbiology, 2019-11, Vol.10, p.2610-2610

2019

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Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen

PloS one, 2012-06, Vol.7 (6), p.e38134-e38134

2012

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The Effect of Iodine-Containing Nano-Micelles, FS-1, on Antibiotic Resistance, Gene Expression and Epigenetic Modifications in the Genome of Multidrug Resistant MRSA Strain Staphylococcus aureus ATCC BAA-39

Frontiers in microbiology, 2020-10, Vol.11, p.581660-581660

2020

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SWPhylo – A Novel Tool for Phylogenomic Inferences by Comparison of Oligonucleotide Patterns and Integration of Genome-Based and Gene-Based Phylogenetic Trees

Evolutionary bioinformatics online, 2018, Vol.14, p.1176934318759299-1176934318759299

2018

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Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats

Environmental microbiology, 2015-02, Vol.17 (2), p.332-345

2015

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Mainstreams of horizontal gene exchange in enterobacteria: consideration of the outbreak of enterohemorrhagic E. coli O104:H4 in Germany in 2011

PloS one, 2011-10, Vol.6 (10), p.e25702

2011

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Analysis of Whole-Genome Sequences of Pathogenic Gram-Positive and Gram-Negative Isolates from the Same Hospital Environment to Investigate Common Evolutionary Trends Associated with Horizontal Gene Exchange, Mutations and DNA Methylation Patterning

Microorganisms (Basel), 2023-01, Vol.11 (2), p.323

2023

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The Effect of Three Complexes of Iodine with Amino Acids on Gene Expression of Model Antibiotic Resistant Microorganisms Escherichia coli ATCC BAA-196 and Staphylococcus aureus ATCC BAA-39

Microorganisms (Basel), 2023-06, Vol.11 (7), p.1705

2023

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Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT

Scientific reports, 2017-06, Vol.7 (1), p.1-12, Article 3682

2017

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Genomic Insight into Mechanisms of Reversion of Antibiotic Resistance in Multidrug Resistant Mycobacterium tuberculosis Induced by a Nanomolecular Iodine-Containing Complex FS-1

Frontiers in cellular and infection microbiology, 2017-05, Vol.7, p.151-151

2017

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Functional Genomics of Stress Response in Pseudomonas putida KT2440

Journal of Bacteriology, 2006-06, Vol.188 (11), p.4079-4092

2006

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Taxonomic characterization and plant colonizing abilities of some bacteria related to Bacillus amyloliquefaciens and Bacillus subtilis

FEMS microbiology ecology, 2004-05, Vol.48 (2), p.249-259

2004

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Comparison of Transcriptional Responses and Metabolic Alterations in Three Multidrug-Resistant Model Microorganisms, Staphylococcus aureus ATCC BAA-39, Escherichia coli ATCC BAA-196, and Acinetobacter baumannii ATCC BAA-1790, on Exposure to Iodine-Containing Nano-micelle Drug FS-1

mSystems, 2021-03, Vol.6 (2)

2021

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Differentiation of regions with atypical oligonucleotide composition in bacterial genomes

BMC bioinformatics, 2005-10, Vol.6 (1), p.251-251, Article 251

2005

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The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage

BMC bioinformatics, 2008-08, Vol.9 (1), p.333-333, Article 333

2008

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Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns

BMC bioinformatics, 2004-07, Vol.5 (1), p.90-90

2004

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Interplay of intracellular and trans‐cellular DNA methylation in natural archaeal consortia

Environmental microbiology reports, 2024-04, Vol.16 (2), p.e13258-n/a

2024

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Virulence and antimicrobial resistance genes are enriched in the plasmidome of clinical Escherichia coli isolates compared with wastewater isolates from western Kenya

Infection, genetics and evolution, 2021-07, Vol.91, p.104784-104784, Article 104784

2021

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Complete genome sequence and epigenetic profile of Bacillus velezensis UCMB5140 used for plant and crop protection in comparison with other plant-associated Bacillus strains

Applied microbiology and biotechnology, 2020-09, Vol.104 (17), p.7643-7656

2020

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Whole Genome-Based Characterization of Listeria monocytogenes Isolates Recovered From the Food Chain in South Africa

Resistance Sniffer: An online tool for prediction of drug resistance patterns of Mycobacterium tuberculosis isolates using next generation sequencing data

Universal Lineage-Independent Markers of Multidrug Resistance in Mycobacterium tuberculosis

Selection of marker genes for genetic barcoding of microorganisms and binning of metagenomic reads by Barcoder software tools

The Epistatic Landscape of Antibiotic Resistance of Different Clades of Mycobacterium tuberculosis

Genetic, Epigenetic and Phenotypic Diversity of Four Bacillus velezensis Strains Used for Plant Protection or as Probiotics

Functional metagenomics unveils a multifunctional glycosyl hydrolase from the family 43 catalysing the breakdown of plant polymers in the calf rumen

The Effect of Iodine-Containing Nano-Micelles, FS-1, on Antibiotic Resistance, Gene Expression and Epigenetic Modifications in the Genome of Multidrug Resistant MRSA Strain Staphylococcus aureus ATCC BAA-39

SWPhylo – A Novel Tool for Phylogenomic Inferences by Comparison of Oligonucleotide Patterns and Integration of Genome-Based and Gene-Based Phylogenetic Trees

Pressure adaptation is linked to thermal adaptation in salt-saturated marine habitats

Mainstreams of horizontal gene exchange in enterobacteria: consideration of the outbreak of enterohemorrhagic E. coli O104:H4 in Germany in 2011

Analysis of Whole-Genome Sequences of Pathogenic Gram-Positive and Gram-Negative Isolates from the Same Hospital Environment to Investigate Common Evolutionary Trends Associated with Horizontal Gene Exchange, Mutations and DNA Methylation Patterning

The Effect of Three Complexes of Iodine with Amino Acids on Gene Expression of Model Antibiotic Resistant Microorganisms Escherichia coli ATCC BAA-196 and Staphylococcus aureus ATCC BAA-39

Metabolic and evolutionary patterns in the extremely acidophilic archaeon Ferroplasma acidiphilum YT

Genomic Insight into Mechanisms of Reversion of Antibiotic Resistance in Multidrug Resistant Mycobacterium tuberculosis Induced by a Nanomolecular Iodine-Containing Complex FS-1

Functional Genomics of Stress Response in Pseudomonas putida KT2440

Taxonomic characterization and plant colonizing abilities of some bacteria related to Bacillus amyloliquefaciens and Bacillus subtilis

Comparison of Transcriptional Responses and Metabolic Alterations in Three Multidrug-Resistant Model Microorganisms, Staphylococcus aureus ATCC BAA-39, Escherichia coli ATCC BAA-196, and Acinetobacter baumannii ATCC BAA-1790, on Exposure to Iodine-Containing Nano-micelle Drug FS-1

Differentiation of regions with atypical oligonucleotide composition in bacterial genomes

The SeqWord Genome Browser: an online tool for the identification and visualization of atypical regions of bacterial genomes through oligonucleotide usage

Global features of sequences of bacterial chromosomes, plasmids and phages revealed by analysis of oligonucleotide usage patterns

Interplay of intracellular and trans‐cellular DNA methylation in natural archaeal consortia

Virulence and antimicrobial resistance genes are enriched in the plasmidome of clinical Escherichia coli isolates compared with wastewater isolates from western Kenya

Genome sequence and functional genomic analysis of the oil-degrading bacterium Oleispira antarctica

Complete genome sequence and epigenetic profile of Bacillus velezensis UCMB5140 used for plant and crop protection in comparison with other plant-associated Bacillus strains

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