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Enhancements and modifications of primer design program Primer3

Bioinformatics, 2007-05, Vol.23 (10), p.1289-1291

2007

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GeneToCN: an alignment-free method for gene copy number estimation directly from next-generation sequencing reads

Scientific reports, 2023-10, Vol.13 (1), p.17765-17765, Article 17765

2023

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A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

PLoS computational biology, 2018-10, Vol.14 (10), p.e1006434-e1006434

2018

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Method for the Identification of Taxon-Specific k -mers from Chloroplast Genome: A Case Study on Tomato Plant ( Solanum lycopersicum )

Frontiers in plant science, 2018-01, Vol.9, p.6-6

2018

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Chromosomal toxin-antitoxin systems in Pseudomonas putida are rather selfish than beneficial

Scientific reports, 2020-06, Vol.10 (1), p.9230, Article 9230

2020

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Preferred and avoided codon pairs in three domains of life

BMC genomics, 2008-10, Vol.9 (1), p.463-463, Article 463

2008

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Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin

Frontiers in plant science, 2020-05, Vol.11, p.646

2020

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Macrolide antibiotics allosterically predispose the ribosome for translation arrest

Proceedings of the National Academy of Sciences - PNAS, 2014-07, Vol.111 (27), p.9804-9809

2014

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PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads

PeerJ (San Francisco, CA), 2018-04, Vol.6, p.e4588-e4588, Article e4588

2018

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Endophytic bacterial communities in peels and pulp of five root vegetables

PloS one, 2019-01, Vol.14 (1), p.e0210542-e0210542

2019

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Phylogenetic distribution of translational GTPases in bacteria

BMC genomics, 2007-01, Vol.8 (1), p.15-15, Article 15

2007

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A human-specific VNTR in the TRIB3 promoter causes gene expression variation between individuals

PLoS genetics, 2020-08, Vol.16 (8), p.e1008981-e1008981

2020

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GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists

Gigascience, 2015-12, Vol.4 (1), p.58-58, Article 58

2015

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Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

Journal of molecular biology, 2001-12, Vol.314 (5), p.1041-1052

2001

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Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs

Frontiers in microbiology, 2021-03, Vol.12, p.601490-601490

2021

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FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads

Scientific reports, 2017-05, Vol.7 (1), p.2537-10, Article 2537

2017

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Genetic structure of Europeans: a view from the North-East

PloS one, 2009-05, Vol.4 (5), p.e5472-e5472

2009

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Multidrug resistant Pseudomonas aeruginosa in Estonian hospitals

BMC infectious diseases, 2018-10, Vol.18 (1), p.513-513, Article 513

2018

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Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers

Scientific reports, 2015-06, Vol.5 (1), p.11606-11606, Article 11606

2015

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Phenotypic and Molecular Epidemiology of ESBL-, AmpC-, and Carbapenemase-Producing Escherichia coli in Northern and Eastern Europe

Frontiers in microbiology, 2019-11, Vol.10, p.2465-2465

2019

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Translation initiation region sequence preferences in Escherichia coli

BMC molecular biology, 2007-10, Vol.8 (1), p.100-100

2007

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Structural Genomic Variation as Risk Factor for Idiopathic Recurrent Miscarriage

Human mutation, 2014-08, Vol.35 (8), p.972-982

2014

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AluMine: alignment-free method for the discovery of polymorphic Alu element insertions

Mobile DNA, 2019-07, Vol.10 (1), p.31-31, Article 31

2019

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Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms

Bioinformatics, 2009-06, Vol.25 (11), p.1349-1355

2009

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Development of a dedicated Golden Gate Assembly Platform (RtGGA) for Rhodotorula toruloides

Metabolic engineering communications, 2022-12, Vol.15, p.e00200-e00200, Article e00200

2022

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Enhancements and modifications of primer design program Primer3

GeneToCN: an alignment-free method for gene copy number estimation directly from next-generation sequencing reads

A k-mer-based method for the identification of phenotype-associated genomic biomarkers and predicting phenotypes of sequenced bacteria

Method for the Identification of Taxon-Specific k -mers from Chloroplast Genome: A Case Study on Tomato Plant ( Solanum lycopersicum )

Chromosomal toxin-antitoxin systems in Pseudomonas putida are rather selfish than beneficial

Preferred and avoided codon pairs in three domains of life

Method for the Identification of Plant DNA in Food Using Alignment-Free Analysis of Sequencing Reads: A Case Study on Lupin

Macrolide antibiotics allosterically predispose the ribosome for translation arrest

PlasmidSeeker: identification of known plasmids from bacterial whole genome sequencing reads

Endophytic bacterial communities in peels and pulp of five root vegetables

Phylogenetic distribution of translational GTPases in bacteria

A human-specific VNTR in the TRIB3 promoter causes gene expression variation between individuals

GenomeTester4: a toolkit for performing basic set operations - union, intersection and complement on k-mer lists

Automatic clustering of orthologs and in-paralogs from pairwise species comparisons

Molecular Characterization of Enterococcus Isolates From Different Sources in Estonia Reveals Potential Transmission of Resistance Genes Among Different Reservoirs

FastGT: an alignment-free method for calling common SNVs directly from raw sequencing reads

Genetic structure of Europeans: a view from the North-East

Multidrug resistant Pseudomonas aeruginosa in Estonian hospitals

Microbial population dynamics in response to Pectobacterium atrosepticum infection in potato tubers

Phenotypic and Molecular Epidemiology of ESBL-, AmpC-, and Carbapenemase-Producing Escherichia coli in Northern and Eastern Europe

Translation initiation region sequence preferences in Escherichia coli

Structural Genomic Variation as Risk Factor for Idiopathic Recurrent Miscarriage

AluMine: alignment-free method for the discovery of polymorphic Alu element insertions

Automatic identification of species-specific repetitive DNA sequences and their utilization for detecting microbial organisms

Development of a dedicated Golden Gate Assembly Platform (RtGGA) for Rhodotorula toruloides

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