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Metabolomic predictors of phenotypic traits can replace and complement measured clinical variables in population-scale expression profiling studies

BMC genomics, 2022-07, Vol.23 (1), p.1-546, Article 546

2022

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Predicting the therapeutic efficacy of MSC in bone tissue engineering using the molecular marker CADM1

Biomaterials, 2013-06, Vol.34 (19), p.4592-4601

2013

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Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis

Genome research, 2014-05, Vol.24 (5), p.733-742

2014

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Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs

Proceedings of the National Academy of Sciences - PNAS, 2018-04, Vol.115 (17), p.4429-4434

2018

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Analysis of high-throughput screening reveals the effect of surface topographies on cellular morphology

Acta biomaterialia, 2015-03, Vol.15, p.29-38

2015

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The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus

Applied microbiology and biotechnology, 2016-08, Vol.100 (16), p.7151-7159

2016

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A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci

Genome research, 2022-04, Vol.32 (4), p.656-670

2022

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Dynamic clonal hematopoiesis and functional T-cell immunity in a supercentenarian

Leukemia, 2021-07, Vol.35 (7), p.2125-2129

2021

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Single-cell reference mapping to construct and extend cell-type hierarchies

NAR genomics and bioinformatics, 2023-09, Vol.5 (3)

2023

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Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data

PLoS computational biology, 2015-08, Vol.11 (8), p.e1004336-e1004336

2015

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A survey of functional genomic variation in domesticated chickens

Genetics selection evolution (Paris), 2018-04, Vol.50 (1), p.17-17, Article 17

2018

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Meta‐analysis on blood transcriptomic studies identifies consistently coexpressed protein–protein interaction modules as robust markers of human aging

Aging cell, 2014-04, Vol.13 (2), p.216-225

2014

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Classification in the presence of class noise using a probabilistic Kernel Fisher method

Pattern recognition, 2007-12, Vol.40 (12), p.3349-3357

2007

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Robust deep learning model for prognostic stratification of pancreatic ductal adenocarcinoma patients

iScience, 2021-12, Vol.24 (12), p.103415-103415, Article 103415

2021

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Integration of DNA Copy Number Alterations and Prognostic Gene Expression Signatures in Breast Cancer Patients

Clinical cancer research, 2010-01, Vol.16 (2), p.651-663

2010

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A comparison of automatic cell identification methods for single-cell RNA sequencing data

Genome Biology, 2019-09, Vol.20 (1), p.194-19, Article 194

2019

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SpaGE: Spatial Gene Enhancement using scRNA-seq

Nucleic acids research, 2020-10, Vol.48 (18), p.e107-e107

2020

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Physiological and Transcriptional Responses of Saccharomyces cerevisiae to Zinc Limitation in Chemostat Cultures

Applied and Environmental Microbiology, 2007-12, Vol.73 (23), p.7680-7692

2007

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Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints

IEEE/ACM transactions on computational biology and bioinformatics, 2011-01, Vol.8 (1), p.206-216

2011

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THE 100-PLUS STUDY: WHAT THE OLDEST-OLD CAN TEACH US

Alzheimer's & dementia, 2014-07, Vol.10 (4), p.P787-P787

2014

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Microarray analysis reveals expression regulation of Wnt antagonists in differentiating osteoblasts

Bone (New York, N.Y.), 2005-05, Vol.36 (5), p.803-811

2005

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Determining epitope specificity of T-cell receptors with transformers

Bioinformatics (Oxford, England), 2023-11, Vol.39 (11)

2023

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Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types

Nature communications, 2017-11, Vol.8 (1), p.1740-10, Article 1740

2017

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Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function

Bioinformatics, 2021-04, Vol.37 (2), p.162-170

2021

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Benchmarking variational AutoEncoders on cancer transcriptomics data

PloS one, 2023-10, Vol.18 (10), p.e0292126-e0292126

2023

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Metabolomic predictors of phenotypic traits can replace and complement measured clinical variables in population-scale expression profiling studies

Predicting the therapeutic efficacy of MSC in bone tissue engineering using the molecular marker CADM1

Somatic mutations found in the healthy blood compartment of a 115-yr-old woman demonstrate oligoclonal hematopoiesis

Nucleus-specific expression in the multinuclear mushroom-forming fungus Agaricus bisporus reveals different nuclear regulatory programs

Analysis of high-throughput screening reveals the effect of surface topographies on cellular morphology

The transcriptional regulator c2h2 accelerates mushroom formation in Agaricus bisporus

A hidden layer of structural variation in transposable elements reveals potential genetic modifiers in human disease-risk loci

Dynamic clonal hematopoiesis and functional T-cell immunity in a supercentenarian

Single-cell reference mapping to construct and extend cell-type hierarchies

Unbiased Quantitative Models of Protein Translation Derived from Ribosome Profiling Data

A survey of functional genomic variation in domesticated chickens

Meta‐analysis on blood transcriptomic studies identifies consistently coexpressed protein–protein interaction modules as robust markers of human aging

Classification in the presence of class noise using a probabilistic Kernel Fisher method

Robust deep learning model for prognostic stratification of pancreatic ductal adenocarcinoma patients

Integration of DNA Copy Number Alterations and Prognostic Gene Expression Signatures in Breast Cancer Patients

A comparison of automatic cell identification methods for single-cell RNA sequencing data

SpaGE: Spatial Gene Enhancement using scRNA-seq

Physiological and Transcriptional Responses of Saccharomyces cerevisiae to Zinc Limitation in Chemostat Cultures

Predicting Metabolic Fluxes Using Gene Expression Differences As Constraints

THE 100-PLUS STUDY: WHAT THE OLDEST-OLD CAN TEACH US

Microarray analysis reveals expression regulation of Wnt antagonists in differentiating osteoblasts

Determining epitope specificity of T-cell receptors with transformers

Visual analysis of mass cytometry data by hierarchical stochastic neighbour embedding reveals rare cell types

Unsupervised protein embeddings outperform hand-crafted sequence and structure features at predicting molecular function

Benchmarking variational AutoEncoders on cancer transcriptomics data

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