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A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland

Genome research, 2016-10, Vol.26 (10), p.1388-1396

2016

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Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing

Clinical infectious diseases, 2017-04, Vol.64 (7), p.886-893

2017

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Molecular tracing of the emergence, diversification, and transmission of S. aureus sequence type 8 in a New York community

Proceedings of the National Academy of Sciences - PNAS, 2014-05, Vol.111 (18), p.6738-6743

2014

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Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis

The Lancet. Microbe, 2020-12, Vol.1 (8), p.e328-e335

2020

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Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community

Science translational medicine, 2017-10, Vol.9 (413)

2017

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Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand

Genome medicine, 2017-09, Vol.9 (1), p.81-81, Article 81

2017

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A common protocol for the simultaneous processing of multiple clinically relevant bacterial species for whole genome sequencing

Scientific reports, 2021-01, Vol.11 (1), p.193-193, Article 193

2021

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Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom

Genome medicine, 2017-07, Vol.9 (1), p.70-70, Article 70

2017

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Use of Vitek 2 Antimicrobial Susceptibility Profile To Identify mecC in Methicillin-Resistant Staphylococcus aureus

Journal of Clinical Microbiology, 2013-08, Vol.51 (8), p.2732-2734

2013

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Genome-based characterization of hospital-adapted Enterococcus faecalis lineages

Nature microbiology, 2016-02, Vol.1 (3), Article 15033

2016

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PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies

Communications biology, 2022-03, Vol.5 (1), p.266-266, Article 266

2022

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Large-Scale Evaluation of a Rapid Fully Automated Analysis Platform to Detect and Refute Outbreaks Based on MRSA Genome Comparisons

mSphere, 2022-12, Vol.7 (6), p.e0028322-e0028322

2022

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Genome-Based Analysis of Enterococcus faecium Bacteremia Associated with Recurrent and Mixed-Strain Infection

Journal of clinical microbiology, 2018-03, Vol.56 (3)

2018

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Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment

Genome research, 2019-04, Vol.29 (4), p.626-634

2019

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Rapid sequencing of MRSA direct from clinical plates in a routine microbiology laboratory

Journal of antimicrobial chemotherapy, 2019-08, Vol.74 (8), p.2153-2156

2019

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Duration of exposure to multiple antibiotics is associated with increased risk of VRE bacteraemia: a nested case-control study

Journal of antimicrobial chemotherapy, 2018-06, Vol.73 (6), p.1692-1699

2018

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Evaluation of a fully automated bioinformatics tool to predict antibiotic resistance from MRSA genomes

Journal of antimicrobial chemotherapy, 2020-05, Vol.75 (5), p.1117-1122

2020

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Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory

Journal of clinical microbiology, 2019-06, Vol.57 (6)

2019

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Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Genome research, 2016-02, Vol.26 (2), p.263-270

2016

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Pilot Evaluation of a Fully Automated Bioinformatics System for Analysis of Methicillin-Resistant Staphylococcus aureus Genomes and Detection of Outbreaks

Journal of clinical microbiology, 2019-11, Vol.57 (11)

2019

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Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance

Nature microbiology, 2021-01, Vol.6 (1), p.103-111

2021

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Genomic surveillance of Escherichia coli in municipal wastewater treatment plants as an indicator of clinically relevant pathogens and their resistance genes

Microbial genomics, 2019-05, Vol.5 (5)

2019

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Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network

Genome medicine, 2016-01, Vol.8 (1), p.4-4, Article 4

2016

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A decade of genomic history for healthcare-associated Enterococcus faecium in the United Kingdom and Ireland

One Health Genomic Surveillance of Escherichia coli Demonstrates Distinct Lineages and Mobile Genetic Elements in Isolates from Humans versus Livestock

Complex Routes of Nosocomial Vancomycin-Resistant Enterococcus faecium Transmission Revealed by Genome Sequencing

Molecular tracing of the emergence, diversification, and transmission of S. aureus sequence type 8 in a New York community

Definition of a genetic relatedness cutoff to exclude recent transmission of meticillin-resistant Staphylococcus aureus: a genomic epidemiology analysis

Longitudinal genomic surveillance of MRSA in the UK reveals transmission patterns in hospitals and the community

Whole genome sequencing of ESBL-producing Escherichia coli isolated from patients, farm waste and canals in Thailand

Genomic Surveillance of Enterococcus faecium Reveals Limited Sharing of Strains and Resistance Genes between Livestock and Humans in the United Kingdom

A common protocol for the simultaneous processing of multiple clinically relevant bacterial species for whole genome sequencing

Longitudinal genomic surveillance of multidrug-resistant Escherichia coli carriage in a long-term care facility in the United Kingdom

Use of Vitek 2 Antimicrobial Susceptibility Profile To Identify mecC in Methicillin-Resistant Staphylococcus aureus

Genome-based characterization of hospital-adapted Enterococcus faecalis lineages

PowerBacGWAS: a computational pipeline to perform power calculations for bacterial genome-wide association studies

Large-Scale Evaluation of a Rapid Fully Automated Analysis Platform to Detect and Refute Outbreaks Based on MRSA Genome Comparisons

Genome-Based Analysis of Enterococcus faecium Bacteremia Associated with Recurrent and Mixed-Strain Infection

Detection of vancomycin-resistant Enterococcus faecium hospital-adapted lineages in municipal wastewater treatment plants indicates widespread distribution and release into the environment

Rapid sequencing of MRSA direct from clinical plates in a routine microbiology laboratory

Duration of exposure to multiple antibiotics is associated with increased risk of VRE bacteraemia: a nested case-control study

Evaluation of a fully automated bioinformatics tool to predict antibiotic resistance from MRSA genomes

Methodology for Whole-Genome Sequencing of Methicillin-Resistant Staphylococcus aureus Isolates in a Routine Hospital Microbiology Laboratory

Building a genomic framework for prospective MRSA surveillance in the United Kingdom and the Republic of Ireland

Pilot Evaluation of a Fully Automated Bioinformatics System for Analysis of Methicillin-Resistant Staphylococcus aureus Genomes and Detection of Outbreaks

Quantifying acquisition and transmission of Enterococcus faecium using genomic surveillance

Genomic surveillance of Escherichia coli in municipal wastewater treatment plants as an indicator of clinically relevant pathogens and their resistance genes

Whole-genome sequencing reveals transmission of vancomycin-resistant Enterococcus faecium in a healthcare network

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