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Anti-virulence strategies to combat bacteria-mediated disease

Nature reviews. Drug discovery, 2010-02, Vol.9 (2), p.117-128

2010

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Hybrid error correction and de novo assembly of single-molecule sequencing reads

Nature biotechnology, 2012-07, Vol.30 (7), p.693-700

2012

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Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli

Nature communications, 2023-03, Vol.14 (1), p.1400-1400, Article 1400

2023

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The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC)

PLoS pathogens, 2009-08, Vol.5 (8), p.e1000553

2009

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Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

Nature reviews. Genetics, 2014-01, Vol.15 (1), p.49-55

2014

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The Human Microbiome: From Symbiosis to Pathogenesis

Annual review of medicine, 2013-01, Vol.64 (1), p.145-163

2013

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Best practices on the differential expression analysis of multi-species RNA-seq

Genome Biology, 2021-04, Vol.22 (1), p.121-23, Article 121

2021

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Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains

PLoS neglected tropical diseases, 2020-09, Vol.14 (9), p.e0008613-e0008613

2020

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Host-specific induction of Escherichia coli fitness genes during human urinary tract infection

Proceedings of the National Academy of Sciences - PNAS, 2014-12, Vol.111 (51), p.18327-18332

2014

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Escherichia coli global gene expression in urine from women with urinary tract infection

PLoS pathogens, 2010-11, Vol.6 (11), p.e1001187-e1001187

2010

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Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli

PLoS neglected tropical diseases, 2019-11, Vol.13 (11), p.e0007825-e0007825

2019

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Conservation and immunogenicity of novel antigens in diverse isolates of enterotoxigenic Escherichia coli

PLoS neglected tropical diseases, 2015-01, Vol.9 (1), p.e0003446-e0003446

2015

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Survival of the Fittest: How Bacterial Pathogens Utilize Bile To Enhance Infection

Clinical microbiology reviews, 2016-10, Vol.29 (4), p.819-836

2016

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Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

Nature genetics, 2014-12, Vol.46 (12), p.1321-1326

2014

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Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains

Scientific reports, 2017-08, Vol.7 (1), p.7011-7011, Article 7011

2017

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Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses

PloS one, 2013-04, Vol.8 (4), p.e62026-e62026

2013

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Antimicrobial resistance, virulence factors and genetic diversity of Escherichia coli isolates from household water supply in Dhaka, Bangladesh

PloS one, 2013-04, Vol.8 (4), p.e61090-e61090

2013

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The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

PeerJ (San Francisco, CA), 2014-04, Vol.2, p.e332-e332

2014

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Multiple Antimicrobial Resistance in Plague: An Emerging Public Health Risk

PloS one, 2007-03, Vol.2 (3), p.e309-e309

2007

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The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

Journal of Bacteriology, 2008-10, Vol.190 (20), p.6881-6893

2008

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Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile

PLoS neglected tropical diseases, 2019-11, Vol.13 (11), p.e0007828-e0007828

2019

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Enterotoxigenic Escherichia coli Secretes a Highly Conserved Mucin-Degrading Metalloprotease To Effectively Engage Intestinal Epithelial Cells

Infection and Immunity, 2014-02, Vol.82 (2), p.509-521

2014

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Changes in microbiome during and after travellers' diarrhea: what we know and what we do not

Journal of travel medicine, 2017-04, Vol.24 (suppl_1), p.S52-S56

Rasko, David A

2017

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An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

Nature communications, 2016-07, Vol.7 (1), p.12218-12218, Article 12218

2016

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Targeting QseC Signaling and Virulence for Antibiotic Development

Science (American Association for the Advancement of Science), 2008-08, Vol.321 (5892), p.1078-1080

2008

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Anti-virulence strategies to combat bacteria-mediated disease

Hybrid error correction and de novo assembly of single-molecule sequencing reads

Genomic diversity of non-diarrheagenic fecal Escherichia coli from children in sub-Saharan Africa and south Asia and their relatedness to diarrheagenic E. coli

The QseC adrenergic signaling cascade in Enterohemorrhagic E. coli (EHEC)

Bacterial genome sequencing in the clinic: bioinformatic challenges and solutions

The Human Microbiome: From Symbiosis to Pathogenesis

Best practices on the differential expression analysis of multi-species RNA-seq

Redefining enteroaggregative Escherichia coli (EAEC): Genomic characterization of epidemiological EAEC strains

Host-specific induction of Escherichia coli fitness genes during human urinary tract infection

Escherichia coli global gene expression in urine from women with urinary tract infection

Conservation and global distribution of non-canonical antigens in Enterotoxigenic Escherichia coli

Conservation and immunogenicity of novel antigens in diverse isolates of enterotoxigenic Escherichia coli

Survival of the Fittest: How Bacterial Pathogens Utilize Bile To Enhance Infection

Identification of enterotoxigenic Escherichia coli (ETEC) clades with long-term global distribution

Locus of Adhesion and Autoaggregation (LAA), a pathogenicity island present in emerging Shiga Toxin–producing Escherichia coli strains

Impact of oral typhoid vaccination on the human gut microbiota and correlations with s. Typhi-specific immunological responses

Antimicrobial resistance, virulence factors and genetic diversity of Escherichia coli isolates from household water supply in Dhaka, Bangladesh

The large-scale blast score ratio (LS-BSR) pipeline: a method to rapidly compare genetic content between bacterial genomes

Multiple Antimicrobial Resistance in Plague: An Emerging Public Health Risk

The Pangenome Structure of Escherichia coli: Comparative Genomic Analysis of E. coli Commensal and Pathogenic Isolates

Comparative genomic analysis and molecular examination of the diversity of enterotoxigenic Escherichia coli isolates from Chile

Enterotoxigenic Escherichia coli Secretes a Highly Conserved Mucin-Degrading Metalloprotease To Effectively Engage Intestinal Epithelial Cells

Changes in microbiome during and after travellers' diarrhea: what we know and what we do not

An integrated genomic and transcriptomic survey of mucormycosis-causing fungi

Targeting QseC Signaling and Virulence for Antibiotic Development

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