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Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics

Nature protocols, 2019-06, Vol.14 (6), p.1687-1707

2019

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The differentiation state of the Schwann cell progenitor drives phenotypic variation between two contagious cancers

PLoS pathogens, 2021-11, Vol.17 (11), p.e1010033-e1010033

2021

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The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in rheumatoid arthritis

The Journal of biological chemistry, 2018-03, Vol.293 (9), p.3236-3251

2018

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MHC-I peptides get out of the groove and enable a novel mechanism of HIV-1 escape

Nature structural & molecular biology, 2017-04, Vol.24 (4), p.387-394

2017

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Thermostability profiling of MHC-bound peptides: a new dimension in immunopeptidomics and aid for immunotherapy design

Nature communications, 2020-12, Vol.11 (1), p.6305-9, Article 6305

2020

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Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma

Cancer immunology research, 2020-10, Vol.8 (10), p.1322-1334

2020

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The RNA-Binding Proteins SRP14 and HMGB3 Control HIV-1 Tat mRNA Processing and Translation During HIV-1 Latency

Frontiers in genetics, 2021-06, Vol.12, p.680725

2021

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A combined immunopeptidomics, proteomics, and cell surface proteomics approach to identify immunotherapy targets for diffuse intrinsic pontine glioma

Frontiers in oncology, 2023-08, Vol.13, p.1192448-1192448

2023

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Immunolyser: A web-based computational pipeline for analysing and mining immunopeptidomic data

Computational and structural biotechnology journal, 2023-01, Vol.21, p.1678-1687

2023

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Endogenous H3.3K27M derived peptide restricted to HLA-A∗02:01 is insufficient for immune-targeting in diffuse midline glioma

Molecular therapy. Oncolytics, 2023-09, Vol.30, p.167-180

2023

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Hydroxychloroquine inhibits the mitochondrial antioxidant system in activated T cells

iScience, 2021-12, Vol.24 (12), p.103509-103509, Article 103509

2021

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Phosphorylated Self-Peptides Alter Human Leukocyte Antigen Class I-Restricted Antigen Presentation and Generate Tumor-Specific Epitopes

Proceedings of the National Academy of Sciences - PNAS, 2009-02, Vol.106 (8), p.2776-2781

2009

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Immunopeptidogenomics: Harnessing RNA-Seq to Illuminate the Dark Immunopeptidome

Molecular & cellular proteomics, 2021-01, Vol.20, p.100143-100143, Article 100143

2021

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New insights and approaches for analyses of immunopeptidomes

Current opinion in immunology, 2022-08, Vol.77, p.102216-102216, Article 102216

2022

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Proteomics special issue: Precision immunology and oncology

Proteomics (Weinheim), 2021-09, Vol.21 (17-18), p.e2000159-n/a

2021

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Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells

Nature (London), 2017-05, Vol.545 (7653), p.243-247

2017

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Benchmarking Bioinformatics Pipelines in Data-Independent Acquisition Mass Spectrometry for Immunopeptidomics

Molecular & cellular proteomics, 2023-04, Vol.22 (4), p.100515-100515, Article 100515

2023

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HLA class II immunopeptidomics reveals that co‐inherited HLA‐allotypes within an extended haplotype can improve proteome coverage for immunosurveillance

Proteomics (Weinheim), 2021-09, Vol.21 (17-18), p.e2000160-n/a

2021

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Immunopeptidomic Analysis Reveals That Deamidated HLA-bound Peptides Arise Predominantly from Deglycosylated Precursors

Molecular & cellular proteomics, 2020-07, Vol.19 (7), p.1236-1247

2020

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HLA Class II Specificity Assessed by High-Density Peptide Microarray Interactions

The Journal of immunology (1950), 2020-07, Vol.205 (1), p.290-299

2020

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A class of γδ T cell receptors recognize the underside of the antigen-presenting molecule MR1

Science (American Association for the Advancement of Science), 2019-12, Vol.366 (6472), p.1522-1527

2019

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Improved peptide-MHC class II interaction prediction through integration of eluted ligand and peptide affinity data

Immunogenetics (New York), 2019-07, Vol.71 (7), p.445-454

2019

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Isolation of HLA Bound Peptides by Immunoaffinity Capture and Identification by Mass Spectrometry

Current protocols, 2021-03, Vol.1 (3), p.e92-n/a

2021

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A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands

Science immunology, 2018-10, Vol.3 (28)

2018

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Mass spectrometry–based identification of MHC-bound peptides for immunopeptidomics

The differentiation state of the Schwann cell progenitor drives phenotypic variation between two contagious cancers

The interplay between citrullination and HLA-DRB1 polymorphism in shaping peptide binding hierarchies in rheumatoid arthritis

MHC-I peptides get out of the groove and enable a novel mechanism of HIV-1 escape

Thermostability profiling of MHC-bound peptides: a new dimension in immunopeptidomics and aid for immunotherapy design

Spliced Peptides and Cytokine-Driven Changes in the Immunopeptidome of Melanoma

An open-source computational and data resource to analyze digital maps of immunopeptidomes

The RNA-Binding Proteins SRP14 and HMGB3 Control HIV-1 Tat mRNA Processing and Translation During HIV-1 Latency

A combined immunopeptidomics, proteomics, and cell surface proteomics approach to identify immunotherapy targets for diffuse intrinsic pontine glioma

Immunolyser: A web-based computational pipeline for analysing and mining immunopeptidomic data

Endogenous H3.3K27M derived peptide restricted to HLA-A∗02:01 is insufficient for immune-targeting in diffuse midline glioma

Hydroxychloroquine inhibits the mitochondrial antioxidant system in activated T cells

Phosphorylated Self-Peptides Alter Human Leukocyte Antigen Class I-Restricted Antigen Presentation and Generate Tumor-Specific Epitopes

Immunopeptidogenomics: Harnessing RNA-Seq to Illuminate the Dark Immunopeptidome

New insights and approaches for analyses of immunopeptidomes

Proteomics special issue: Precision immunology and oncology

Dominant protection from HLA-linked autoimmunity by antigen-specific regulatory T cells

Benchmarking Bioinformatics Pipelines in Data-Independent Acquisition Mass Spectrometry for Immunopeptidomics

HLA class II immunopeptidomics reveals that co‐inherited HLA‐allotypes within an extended haplotype can improve proteome coverage for immunosurveillance

Immunopeptidomic Analysis Reveals That Deamidated HLA-bound Peptides Arise Predominantly from Deglycosylated Precursors

HLA Class II Specificity Assessed by High-Density Peptide Microarray Interactions

A class of γδ T cell receptors recognize the underside of the antigen-presenting molecule MR1

Improved peptide-MHC class II interaction prediction through integration of eluted ligand and peptide affinity data

Isolation of HLA Bound Peptides by Immunoaffinity Capture and Identification by Mass Spectrometry

A subset of HLA-I peptides are not genomically templated: Evidence for cis- and trans-spliced peptide ligands

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