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Quantitative profiling of protease specificity

PLoS computational biology, 2021-02, Vol.17 (2), p.e1008101-e1008101

2021

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Basis for substrate recognition and distinction by matrix metalloproteinases

Proceedings of the National Academy of Sciences - PNAS, 2014-10, Vol.111 (40), p.E4148-E4155

2014

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CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events

PloS one, 2015-05, Vol.10 (5), p.e0127877-e0127877

2015

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Matrix metalloproteinase proteolysis of the myelin basic protein isoforms is a source of immunogenic peptides in autoimmune multiple sclerosis

PloS one, 2009-03, Vol.4 (3), p.e4952-e4952

2009

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Correction: CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events

PloS one, 2015-06, Vol.10 (6), p.e0131952-e0131952

2015

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Targeting Host Cell Furin Proprotein Convertases as a Therapeutic Strategy against Bacterial Toxins and Viral Pathogens

The Journal of biological chemistry, 2007-07, Vol.282 (29), p.20847-20853

2007

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Cleavage preference distinguishes the two-component NS2B-NS3 serine proteinases of Dengue and West Nile viruses

Biochemical journal, 2007-02, Vol.401 (3), p.743-752

2007

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Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase

Biochemical journal, 2006-01, Vol.393 (Pt 2), p.503-511

2006

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Inflammatory Proprotein Convertase-Matrix Metalloproteinase Proteolytic Pathway in Antigen-presenting Cells as a Step to Autoimmune Multiple Sclerosis

The Journal of biological chemistry, 2009-10, Vol.284 (44), p.30615-30626

2009

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The Two-component NS2B-NS3 Proteinase Represses DNA Unwinding Activity of the West Nile Virus NS3 Helicase

The Journal of biological chemistry, 2008-06, Vol.283 (25), p.17270-17278

2008

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HTS identifies novel and specific uncompetitive inhibitors of the two-component NS2B-NS3 proteinase of West Nile virus

Assay and drug development technologies, 2007-12, Vol.5 (6), p.737-750

2007

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Switching the Substrate Specificity of the Two-Component NS2B-NS3 Flavivirus Proteinase by Structure-Based Mutagenesis

Journal of Virology, 2007-05, Vol.81 (9), p.4501-4509

2007

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Internal Cleavages of the Autoinhibitory Prodomain Are Required for Membrane Type 1 Matrix Metalloproteinase Activation, although Furin Cleavage Alone Generates Inactive Proteinase

The Journal of biological chemistry, 2010-09, Vol.285 (36), p.27726-27736

2010

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Isolation and characterization of selective and potent human Fab inhibitors directed to the active-site region of the two-component NS2B-NS3 proteinase of West Nile virus

Biochemical journal, 2010-05, Vol.427 (3), p.369-376

2010

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A Unique Substrate Binding Mode Discriminates Membrane Type-1 Matrix Metalloproteinase from Other Matrix Metalloproteinases

The Journal of biological chemistry, 2002-06, Vol.277 (26), p.23788-23793

2002

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Predictive models of protease specificity based on quantitative protease-activity profiling data

Biochimica et biophysica acta. Proteins and proteomics, 2019-11, Vol.1867 (11), p.140253-140253, Article 140253

2019

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The cytoplasmic tail peptide sequence of membrane type‐1 matrix metalloproteinase (MT1‐MMP) directly binds to gC1qR, a compartment‐specific chaperone‐like regulatory protein

FEBS letters, 2002-09, Vol.527 (1-3), p.51-57

2002

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Substrate Cleavage Analysis of Furin and Related Proprotein Convertases: A COMPARATIVE STUDY

The Journal of biological chemistry, 2008-07, Vol.283 (30), p.20897-20906

2008

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Gelatin Zymography and Substrate Cleavage Assays of Matrix Metalloproteinase-2 in Breast Carcinoma Cells Overexpressing Membrane Type-1 Matrix Metalloproteinase

Laboratory investigation, 2002-11, Vol.82 (11), p.1583-1590

2002

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The Novel Cdc42 Guanine Nucleotide Exchange Factor, Zizimin1, Dimerizes via the Cdc42-binding CZH2 Domain

The Journal of biological chemistry, 2004-09, Vol.279 (36), p.37470-37476

2004

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Prinomastat, a hydroxamate inhibitor of matrix metalloproteinases, has a complex effect on migration of breast carcinoma cells

International journal of cancer, 2003-05, Vol.104 (5), p.533-541

2003

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Structure–activity relationship and improved hydrolytic stability of pyrazole derivatives that are allosteric inhibitors of West Nile Virus NS2B-NS3 proteinase

Bioorganic & medicinal chemistry letters, 2009-10, Vol.19 (19), p.5773-5777

2009

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Matrix-dependent Proteolysis of Surface Transglutaminase by Membrane-type Metalloproteinase Regulates Cancer Cell Adhesion and Locomotion

The Journal of biological chemistry, 2001-05, Vol.276 (21), p.18415-18422

2001

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Virtual ligand screening of the National Cancer Institute (NCI) compound library leads to the allosteric inhibitory scaffolds of the West Nile Virus NS3 proteinase

Assay and drug development technologies, 2011-02, Vol.9 (1), p.69-78

2011

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Structure-based mutagenesis identifies important novel determinants of the NS2B cofactor of the West Nile virus two-component NS2B-NS3 proteinase

Journal of general virology, 2008-03, Vol.89 (3), p.636-641

2008

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Quantitative profiling of protease specificity

Basis for substrate recognition and distinction by matrix metalloproteinases

CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events

Matrix metalloproteinase proteolysis of the myelin basic protein isoforms is a source of immunogenic peptides in autoimmune multiple sclerosis

Correction: CleavPredict: A Platform for Reasoning about Matrix Metalloproteinases Proteolytic Events

Targeting Host Cell Furin Proprotein Convertases as a Therapeutic Strategy against Bacterial Toxins and Viral Pathogens

Cleavage preference distinguishes the two-component NS2B-NS3 serine proteinases of Dengue and West Nile viruses

Cleavage targets and the D-arginine-based inhibitors of the West Nile virus NS3 processing proteinase

Inflammatory Proprotein Convertase-Matrix Metalloproteinase Proteolytic Pathway in Antigen-presenting Cells as a Step to Autoimmune Multiple Sclerosis

The Two-component NS2B-NS3 Proteinase Represses DNA Unwinding Activity of the West Nile Virus NS3 Helicase

HTS identifies novel and specific uncompetitive inhibitors of the two-component NS2B-NS3 proteinase of West Nile virus

Switching the Substrate Specificity of the Two-Component NS2B-NS3 Flavivirus Proteinase by Structure-Based Mutagenesis

Internal Cleavages of the Autoinhibitory Prodomain Are Required for Membrane Type 1 Matrix Metalloproteinase Activation, although Furin Cleavage Alone Generates Inactive Proteinase

Isolation and characterization of selective and potent human Fab inhibitors directed to the active-site region of the two-component NS2B-NS3 proteinase of West Nile virus

A Unique Substrate Binding Mode Discriminates Membrane Type-1 Matrix Metalloproteinase from Other Matrix Metalloproteinases

Predictive models of protease specificity based on quantitative protease-activity profiling data

The cytoplasmic tail peptide sequence of membrane type‐1 matrix metalloproteinase (MT1‐MMP) directly binds to gC1qR, a compartment‐specific chaperone‐like regulatory protein

Substrate Cleavage Analysis of Furin and Related Proprotein Convertases: A COMPARATIVE STUDY

Gelatin Zymography and Substrate Cleavage Assays of Matrix Metalloproteinase-2 in Breast Carcinoma Cells Overexpressing Membrane Type-1 Matrix Metalloproteinase

The Novel Cdc42 Guanine Nucleotide Exchange Factor, Zizimin1, Dimerizes via the Cdc42-binding CZH2 Domain

Prinomastat, a hydroxamate inhibitor of matrix metalloproteinases, has a complex effect on migration of breast carcinoma cells

Structure–activity relationship and improved hydrolytic stability of pyrazole derivatives that are allosteric inhibitors of West Nile Virus NS2B-NS3 proteinase

Matrix-dependent Proteolysis of Surface Transglutaminase by Membrane-type Metalloproteinase Regulates Cancer Cell Adhesion and Locomotion

Virtual ligand screening of the National Cancer Institute (NCI) compound library leads to the allosteric inhibitory scaffolds of the West Nile Virus NS3 proteinase

Structure-based mutagenesis identifies important novel determinants of the NS2B cofactor of the West Nile virus two-component NS2B-NS3 proteinase

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