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Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development

Immunity (Cambridge, Mass.), 2015-11, Vol.43 (5), p.933-944

2015

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Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis

Proceedings of the National Academy of Sciences - PNAS, 2010-10, Vol.107 (41), p.17845-17850

2010

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Health and disease markers correlate with gut microbiome composition across thousands of people

Nature communications, 2020-10, Vol.11 (1), p.5206-5206, Article 5206

2020

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Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus

Neuron (Cambridge, Mass.), 2018-07, Vol.99 (1), p.64-82.e7

2018

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IL-10 Alters Immunoproteostasis in APP Mice, Increasing Plaque Burden and Worsening Cognitive Behavior

Neuron (Cambridge, Mass.), 2015-02, Vol.85 (3), p.519-533

2015

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Genome-scale modeling for metabolic engineering

Journal of industrial microbiology & biotechnology, 2015-03, Vol.42 (3), p.327-338

2015

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iREAD: a tool for intron retention detection from RNA-seq data

BMC genomics, 2020-02, Vol.21 (1), p.128-128, Article 128

2020

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Achievements and perspectives to overcome the poor solvent resistance in acetone and butanol-producing microorganisms

Applied microbiology and biotechnology, 2010-02, Vol.85 (6), p.1697-1712

2010

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Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention

Nature medicine, 2023-04, Vol.29 (4), p.996-1008

2023

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Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction

PLoS computational biology, 2015-11, Vol.11 (11), p.e1004530-e1004530

2015

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Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations

PloS one, 2016-08, Vol.11 (8), p.e0157077-e0157077

2016

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OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling

PLoS computational biology, 2019-03, Vol.15 (3), p.e1006835-e1006835

2019

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A data-driven approach to improve wellness and reduce recurrence in cancer survivors

Frontiers in oncology, 2024-04, Vol.14, p.1397008-1397008

2024

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The effect of maternal SARS-CoV-2 infection timing on birth outcomes: a retrospective multicentre cohort study

The Lancet. Digital health, 2022-02, Vol.4 (2), p.e95-e104

2022

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The P4 Health Spectrum – A Predictive, Preventive, Personalized and Participatory Continuum for Promoting Healthspan

Progress in cardiovascular diseases, 2017-03, Vol.59 (5), p.506-521

2017

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Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis

PLoS computational biology, 2015-11, Vol.11 (11), p.e1004543

2015

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Risk factors for severe COVID-19 differ by age for hospitalized adults

Scientific reports, 2022-04, Vol.12 (1), p.6568-6568, Article 6568

2022

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Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population

Proceedings of the National Academy of Sciences - PNAS, 2013-08, Vol.110 (34), p.14006-14011

2013

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Genome-scale consequences of cofactor balancing in engineered pentose utilization pathways in Saccharomyces cerevisiae

PloS one, 2011-11, Vol.6 (11), p.e27316-e27316

2011

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Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states

Proceedings of the National Academy of Sciences - PNAS, 2011-11, Vol.108 (44), p.18020-18025

2011

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Human whole genome genotype and transcriptome data for Alzheimer’s and other neurodegenerative diseases

Scientific data, 2016-10, Vol.3 (1), p.160089-160089, Article 160089

2016

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Metabolic constraint-based refinement of transcriptional regulatory networks

PLoS computational biology, 2013-12, Vol.9 (12), p.e1003370-e1003370

2013

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Genome-scale models of microbial cells: evaluating the consequences of constraints

Nature reviews. Microbiology, 2004-11, Vol.2 (11), p.886-897

2004

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Accelerating adverse pregnancy outcomes research amidst rising medication use: parallel retrospective cohort analyses for signal prioritization

BMC medicine, 2024-10, Vol.22 (1), p.495-13, Article 495

2024

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Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast

PLoS computational biology, 2017-05, Vol.13 (5), p.e1005489-e1005489

2017

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Isoforms of RNA-Editing Enzyme ADAR1 Independently Control Nucleic Acid Sensor MDA5-Driven Autoimmunity and Multi-organ Development

Probabilistic integrative modeling of genome-scale metabolic and regulatory networks in Escherichia coli and Mycobacterium tuberculosis

Health and disease markers correlate with gut microbiome composition across thousands of people

Multiscale Analysis of Independent Alzheimer’s Cohorts Finds Disruption of Molecular, Genetic, and Clinical Networks by Human Herpesvirus

IL-10 Alters Immunoproteostasis in APP Mice, Increasing Plaque Burden and Worsening Cognitive Behavior

Genome-scale modeling for metabolic engineering

iREAD: a tool for intron retention detection from RNA-seq data

Achievements and perspectives to overcome the poor solvent resistance in acetone and butanol-producing microorganisms

Multiomic signatures of body mass index identify heterogeneous health phenotypes and responses to a lifestyle intervention

Comparative Analysis of Yeast Metabolic Network Models Highlights Progress, Opportunities for Metabolic Reconstruction

Predictive Big Data Analytics: A Study of Parkinson's Disease Using Large, Complex, Heterogeneous, Incongruent, Multi-Source and Incomplete Observations

OptRAM: In-silico strain design via integrative regulatory-metabolic network modeling

A data-driven approach to improve wellness and reduce recurrence in cancer survivors

The effect of maternal SARS-CoV-2 infection timing on birth outcomes: a retrospective multicentre cohort study

The P4 Health Spectrum – A Predictive, Preventive, Personalized and Participatory Continuum for Promoting Healthspan

Integrated Modeling of Gene Regulatory and Metabolic Networks in Mycobacterium tuberculosis

Risk factors for severe COVID-19 differ by age for hospitalized adults

Heterogeneity in protein expression induces metabolic variability in a modeled Escherichia coli population

Genome-scale consequences of cofactor balancing in engineered pentose utilization pathways in Saccharomyces cerevisiae

Behavior-specific changes in transcriptional modules lead to distinct and predictable neurogenomic states

Human whole genome genotype and transcriptome data for Alzheimer’s and other neurodegenerative diseases

Metabolic constraint-based refinement of transcriptional regulatory networks

Genome-scale models of microbial cells: evaluating the consequences of constraints

Accelerating adverse pregnancy outcomes research amidst rising medication use: parallel retrospective cohort analyses for signal prioritization

Combining inferred regulatory and reconstructed metabolic networks enhances phenotype prediction in yeast

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