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Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota

PLoS biology, 2006-04, Vol.4 (4), p.e95-e95

2006

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Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

Science (American Association for the Advancement of Science), 2011-09, Vol.333 (6047), p.1296-1300

2011

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Underwater application of quantitative PCR on an ocean mooring

PloS one, 2011-08, Vol.6 (8), p.e22522-e22522

2011

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Ecological divergence of syntopic marine bacterial species is shaped by gene content and expression

The ISME Journal, 2023-06, Vol.17 (6), p.813-822

2023

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Community Genomics among Stratified Microbial Assemblages in the Ocean's Interior

Science (American Association for the Advancement of Science), 2006-01, Vol.311 (5760), p.496-503

2006

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Remote, autonomous real-time monitoring of environmental DNA from commercial fish

Scientific reports, 2020-08, Vol.10 (1), p.13272, Article 13272

2020

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Autonomous Tracking and Sampling of the Deep Chlorophyll Maximum Layer in an Open-Ocean Eddy by a Long-Range Autonomous Underwater Vehicle

IEEE journal of oceanic engineering, 2020-10, Vol.45 (4), p.1308-1321

2020

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Quantitative PCR method for enumeration of cells of cryptic species of the toxic marine dinoflagellate Ostreopsis spp. in coastal waters of Japan

PloS one, 2013-03, Vol.8 (3), p.e57627

2013

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In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle

Frontiers in Marine Science, 2019-07, Vol.6

2019

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Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

The ISME Journal, 2011-12, Vol.5 (12), p.1881-1895

2011

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THE QUEST TO DEVELOP ECOGENOMIC SENSORS: A 25-Year History of the Environmental Sample Processor (ESP) as a Case Study

Oceanography (Washington, D.C.), 2017-12, Vol.30 (4), p.100-113

2017

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Unprecedented DMSP Concentrations in a Massive Dinoflagellate Bloom in Monterey Bay, CA

Geophysical research letters, 2019-11, Vol.46 (21), p.12279-12288

2019

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Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

Environmental microbiology, 2007-05, Vol.9 (5), p.1162-1175

2007

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Microdiversity and temporal dynamics of marine bacterial dimethylsulfoniopropionate genes

Environmental microbiology, 2019-05, Vol.21 (5), p.1687-1701

2019

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Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics

Science (American Association for the Advancement of Science), 2004-09, Vol.305 (5689), p.1457-1462

2004

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Identification of Methyl Coenzyme M Reductase A (mcrA) Genes Associated with Methane-Oxidizing Archaea

Applied and Environmental Microbiology, 2003-09, Vol.69 (9), p.5483-5491

2003

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Genomic Analysis of the Uncultivated Marine Crenarchaeote Cenarchaeum symbiosum

Proceedings of the National Academy of Sciences - PNAS, 2006-11, Vol.103 (48), p.18296-18301

2006

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Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning

Virology journal, 2011-06, Vol.8 (1), p.287-287, Article 287

2011

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Persistent Sampling of Vertically Migrating Biological Layers by an Autonomous Underwater Vehicle Within the Beam of a Seabed-Mounted Echosounder

IEEE journal of oceanic engineering, 2021-04, Vol.46 (2), p.497-508

2021

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Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

Scientific data, 2019-07, Vol.6 (1), p.129-7, Article 129

2019

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REMOTE DETECTION OF MARINE MICROBES, SMALL INVERTEBRATES, HARMFUL ALGAE, AND BIOTOXINS USING THE ENVIRONMENTAL SAMPLE PROCESSOR (ESP)

Oceanography (Washington, D.C.), 2009-06, Vol.22 (2), p.158-167

2009

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Unsuspected diversity among marine aerobic anoxygenic phototrophs

Nature (London), 2002-02, Vol.415 (6872), p.630-633

2002

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Autonomous eDNA collection using an uncrewed surface vessel over a 4200‐km transect of the eastern Pacific Ocean

Environmental DNA (Hoboken, N.J.), 2024-01, Vol.6 (1), p.n/a

2024

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Single-taxon field measurements of bacterial gene regulation controlling DMSP fate

The ISME Journal, 2015-07, Vol.9 (7), p.1677-1686

2015

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High‐frequency and long‐term observations of eDNA from imperiled salmonids in a coastal stream: Temporal dynamics, relationships with environmental factors, and comparisons with conventional observations

Environmental DNA (Hoboken, N.J.), 2022-07, Vol.4 (4), p.776-789

2022

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Pathways of carbon assimilation and ammonia oxidation suggested by environmental genomic analyses of marine Crenarchaeota

Potential for Chemolithoautotrophy Among Ubiquitous Bacteria Lineages in the Dark Ocean

Underwater application of quantitative PCR on an ocean mooring

Ecological divergence of syntopic marine bacterial species is shaped by gene content and expression

Community Genomics among Stratified Microbial Assemblages in the Ocean's Interior

Remote, autonomous real-time monitoring of environmental DNA from commercial fish

Autonomous Tracking and Sampling of the Deep Chlorophyll Maximum Layer in an Open-Ocean Eddy by a Long-Range Autonomous Underwater Vehicle

Quantitative PCR method for enumeration of cells of cryptic species of the toxic marine dinoflagellate Ostreopsis spp. in coastal waters of Japan

In situ Autonomous Acquisition and Preservation of Marine Environmental DNA Using an Autonomous Underwater Vehicle

Metatranscriptomic analysis of autonomously collected and preserved marine bacterioplankton

THE QUEST TO DEVELOP ECOGENOMIC SENSORS: A 25-Year History of the Environmental Sample Processor (ESP) as a Case Study

Unprecedented DMSP Concentrations in a Massive Dinoflagellate Bloom in Monterey Bay, CA

Quantitative distribution of presumptive archaeal and bacterial nitrifiers in Monterey Bay and the North Pacific Subtropical Gyre

Microdiversity and temporal dynamics of marine bacterial dimethylsulfoniopropionate genes

Reverse Methanogenesis: Testing the Hypothesis with Environmental Genomics

Identification of Methyl Coenzyme M Reductase A (mcrA) Genes Associated with Methane-Oxidizing Archaea

Genomic Analysis of the Uncultivated Marine Crenarchaeote Cenarchaeum symbiosum

Analysis of a viral metagenomic library from 200 m depth in Monterey Bay, California constructed by direct shotgun cloning

Persistent Sampling of Vertically Migrating Biological Layers by an Autonomous Underwater Vehicle Within the Beam of a Seabed-Mounted Echosounder

Microbial metagenomes and metatranscriptomes during a coastal phytoplankton bloom

REMOTE DETECTION OF MARINE MICROBES, SMALL INVERTEBRATES, HARMFUL ALGAE, AND BIOTOXINS USING THE ENVIRONMENTAL SAMPLE PROCESSOR (ESP)

Unsuspected diversity among marine aerobic anoxygenic phototrophs

Autonomous eDNA collection using an uncrewed surface vessel over a 4200‐km transect of the eastern Pacific Ocean

Single-taxon field measurements of bacterial gene regulation controlling DMSP fate

High‐frequency and long‐term observations of eDNA from imperiled salmonids in a coastal stream: Temporal dynamics, relationships with environmental factors, and comparisons with conventional observations

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