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PDBsum: Structural summaries of PDB entries

Protein science, 2018-01, Vol.27 (1), p.129-134

2018

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PDBe: improved findability of macromolecular structure data in the PDB

Nucleic acids research, 2020-01, Vol.48 (D1), p.D335

2020

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Anatomy of enzyme channels

BMC bioinformatics, 2014-11, Vol.15 (1), p.379-379, Article 379

2014

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PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data

Bioinformatics (Oxford, England), 2021-11, Vol.37 (21), p.3950-3952

2021

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PDBeCIF: an open-source mmCIF/CIF parsing and processing package

BMC bioinformatics, 2021-07, Vol.22 (1), p.1-383, Article 383

2021

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ChannelsDB: database of biomacromolecular tunnels and pores

Nucleic acids research, 2018-01, Vol.46 (D1), p.D399-D405

2018

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Finding enzyme cofactors in Protein Data Bank

Bioinformatics, 2019-09, Vol.35 (18), p.3510-3511

2019

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Visualization and Analysis of Protein Structures with LiteMol Suite

Methods in molecular biology (Clifton, N.J.), 2020-01, Vol.2112, p.1

2020

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LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

Nature methods, 2017-12, Vol.14 (12), p.1121-1122

2017

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The Diversity of Yellow-Related Proteins in Sand Flies (Diptera: Psychodidae)

PloS one, 2016-11, Vol.11 (11), p.e0166191-e0166191

2016

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MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)

Nucleic acids research, 2018-07, Vol.46 (W1), p.W368-W373

2018

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PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank

Journal of cheminformatics, 2023-12, Vol.15 (1), p.117-117, Article 117

2023

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PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank

Nucleic acids research, 2015-07, Vol.43 (W1), p.W383-W388

2015

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MOLE 2.0: advanced approach for analysis of biomacromolecular channels

Journal of cheminformatics, 2013-08, Vol.5 (1), p.39-39, Article 39

2013

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ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

Nucleic acids research, 2015-01, Vol.43 (Database issue), p.D369-D375

2015

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MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes

Nucleic acids research, 2014-07, Vol.42 (Web Server issue), p.W227-W233

2014

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Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases

1, 2017

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Bringing together functional annotations related to structure

Acta crystallographica. Section A, Foundations and advances, 2018-08, Vol.74 (a2), p.e232-e232

2018

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AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules

Journal of cheminformatics, 2015-10, Vol.7 (1), p.50-50, Article 50

2015

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Protein Data Bank: the single global archive for 3D macromolecular structure data

Nucleic acids research, 2019-01, Vol.47 (D1), p.D520-D528

2019

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PDBe-KB: a community-driven resource for structural and functional annotations

Nucleic acids research, 2020-01, Vol.48 (D1), p.D344-D353

2020

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Effective on-Demand Mining of Structural Databases

Biophysical journal, 2017-02, Vol.112 (3), p.348a-348a

2017

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PDBe-KB: collaboratively defining the biological context of structural data

Nucleic acids research, 2022-01, Vol.50 (D1), p.D534-D542

2022

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The Enzyme Portal: an integrative tool for enzyme information and analysis

The FEBS journal, 2022-10, Vol.289 (19), p.5875-5890

2022

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PDBsum: Structural summaries of PDB entries

PDBe: improved findability of macromolecular structure data in the PDB

Anatomy of enzyme channels

PDBe aggregated API: programmatic access to an integrative knowledge graph of molecular structure data

PDBeCIF: an open-source mmCIF/CIF parsing and processing package

ChannelsDB: database of biomacromolecular tunnels and pores

Finding enzyme cofactors in Protein Data Bank

Visualization and Analysis of Protein Structures with LiteMol Suite

PDBe and PDBe‐KB: Providing high‐quality, up‐to‐date and integrated resources of macromolecular structures to support basic and applied research and education

LiteMol suite: interactive web-based visualization of large-scale macromolecular structure data

The Diversity of Yellow-Related Proteins in Sand Flies (Diptera: Psychodidae)

MOLEonline: a web-based tool for analyzing channels, tunnels and pores (2018 update)

PDBe CCDUtils: an RDKit-based toolkit for handling and analysing small molecules in the Protein Data Bank

PatternQuery: web application for fast detection of biomacromolecular structural patterns in the entire Protein Data Bank

MOLE 2.0: advanced approach for analysis of biomacromolecular channels

ValidatorDB: database of up-to-date validation results for ligands and non-standard residues from the Protein Data Bank

MotiveValidator: interactive web-based validation of ligand and residue structure in biomolecular complexes

Structural Bioinformatics Tools for Drug Design: Extraction of Biologically Relevant Information from Structural Databases

Bringing together functional annotations related to structure

AtomicChargeCalculator: interactive web-based calculation of atomic charges in large biomolecular complexes and drug-like molecules

Protein Data Bank: the single global archive for 3D macromolecular structure data

PDBe-KB: a community-driven resource for structural and functional annotations

Effective on-Demand Mining of Structural Databases

PDBe-KB: collaboratively defining the biological context of structural data

The Enzyme Portal: an integrative tool for enzyme information and analysis

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