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Nebulosa recovers single-cell gene expression signals by kernel density estimation

Bioinformatics (Oxford, England), 2021-08, Vol.37 (16), p.2485-2487

2021

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scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

Genome Biology, 2019-12, Vol.20 (1), p.264-17, Article 264

2019

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DropletQC: improved identification of empty droplets and damaged cells in single-cell RNA-seq data

Genome Biology, 2021-12, Vol.22 (1), p.329-329, Article 329

2021

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Benchmarking of cell type deconvolution pipelines for transcriptomics data

Nature communications, 2020-11, Vol.11 (1), p.5650-5650, Article 5650

2020

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Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

Nature genetics, 2016-05, Vol.48 (5), p.481-487

2016

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Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease

Science (American Association for the Advancement of Science), 2022-04, Vol.376 (6589), p.eabf3041-eabf3041

2022

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Reconciling the analysis of IBD and IBS in complex trait studies

Nature reviews. Genetics, 2010-11, Vol.11 (11), p.800-805

2010

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Signatures of negative selection in the genetic architecture of human complex traits

Nature genetics, 2018-05, Vol.50 (5), p.746-753

2018

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Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation

Cell stem cell, 2018-10, Vol.23 (4), p.586-598.e8

2018

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The Genetic Architecture of Gene Expression in Peripheral Blood

American journal of human genetics, 2017-02, Vol.100 (2), p.228-237

2017

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Identification of 55,000 Replicated DNA Methylation QTL

Scientific reports, 2018-12, Vol.8 (1), p.17605-9, Article 17605

2018

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Transcriptomics and single‐cell RNA‐sequencing

Respirology (Carlton, Vic.), 2019-01, Vol.24 (1), p.29-36

2019

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Pitfalls and opportunities for applying latent variables in single-cell eQTL analyses

Genome Biology, 2023-02, Vol.24 (1), p.33-11, Article 33

2023

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Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations

Genome research, 2018-07, Vol.28 (7), p.1053-1066

2018

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Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells

Cell reports (Cambridge), 2019-05, Vol.27 (9), p.2748-2758.e3

2019

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Deciphering cancer cell state plasticity with single-cell genomics and artificial intelligence

Genome medicine, 2024-02, Vol.16 (1), p.36-3, Article 36

2024

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Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells

Genome Biology, 2021-03, Vol.22 (1), p.76-76, Article 76

2021

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Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence

Genome research, 2012-08, Vol.22 (8), p.1395-1406

2012

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Genotype-free demultiplexing of pooled single-cell RNA-seq

Genome Biology, 2019-12, Vol.20 (1), p.290-290, Article 290

2019

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AAV-Mediated CRISPR/Cas Gene Editing of Retinal Cells In Vivo

Investigative ophthalmology & visual science, 2016-06, Vol.57 (7), p.3470-3476

2016

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Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs

Genome research, 2011-06, Vol.21 (6), p.821-829

2011

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Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank

Science advances, 2019-08, Vol.5 (8), p.eaaw3538

2019

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Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

Genome Biology, 2024-04, Vol.25 (1), p.94-24, Article 94

2024

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Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration

Nature communications, 2022-07, Vol.13 (1), p.4233-18, Article 4233

2022

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Nebulosa recovers single-cell gene expression signals by kernel density estimation

scPred: accurate supervised method for cell-type classification from single-cell RNA-seq data

DropletQC: improved identification of empty droplets and damaged cells in single-cell RNA-seq data

Benchmarking of cell type deconvolution pipelines for transcriptomics data

Integration of summary data from GWAS and eQTL studies predicts complex trait gene targets

Single-cell eQTL mapping identifies cell type-specific genetic control of autoimmune disease

Reconciling the analysis of IBD and IBS in complex trait studies

Signatures of negative selection in the genetic architecture of human complex traits

Single-Cell Transcriptomic Analysis of Cardiac Differentiation from Human PSCs Reveals HOPX-Dependent Cardiomyocyte Maturation

The Genetic Architecture of Gene Expression in Peripheral Blood

Identification of 55,000 Replicated DNA Methylation QTL

Transcriptomics and single‐cell RNA‐sequencing

Pitfalls and opportunities for applying latent variables in single-cell eQTL analyses

Single-cell RNA-seq of human induced pluripotent stem cells reveals cellular heterogeneity and cell state transitions between subpopulations

Genome-wide association study of intraocular pressure uncovers new pathways to glaucoma

Single-Cell Transcriptional Profiling of Aortic Endothelium Identifies a Hierarchy from Endovascular Progenitors to Differentiated Cells

Deciphering cancer cell state plasticity with single-cell genomics and artificial intelligence

Single cell eQTL analysis identifies cell type-specific genetic control of gene expression in fibroblasts and reprogrammed induced pluripotent stem cells

Neonatal DNA methylation profile in human twins is specified by a complex interplay between intrauterine environmental and genetic factors, subject to tissue-specific influence

Genotype-free demultiplexing of pooled single-cell RNA-seq

AAV-Mediated CRISPR/Cas Gene Editing of Retinal Cells In Vivo

Human population dispersal "Out of Africa" estimated from linkage disequilibrium and allele frequencies of SNPs

Genotype-by-environment interactions inferred from genetic effects on phenotypic variability in the UK Biobank

Demuxafy: improvement in droplet assignment by integrating multiple single-cell demultiplexing and doublet detection methods

Transcriptomic and proteomic retinal pigment epithelium signatures of age-related macular degeneration

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