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Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

eLife, 2017-06, Vol.6

Pott, Sebastian

2017

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GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership

Genome Biology, 2023-10, Vol.24 (1), p.236-236, Article 236

2023

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Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

Scientific reports, 2020-01, Vol.10 (1), p.1535-1535, Article 1535

2020

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PIF1 family DNA helicases suppress R-loop mediated genome instability at tRNA genes

Nature communications, 2017-04, Vol.8 (1), p.15025-15025, Article 15025

2017

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Regulation of Transcription through Acetylation of H3K122 on the Lateral Surface of the Histone Octamer

Cell, 2013-02, Vol.152 (4), p.859-872

2013

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Transcription factor Ebf1 regulates differentiation stage-specific signaling, proliferation, and survival of B cells

Genes & development, 2012-04, Vol.26 (7), p.668-682

2012

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Early B Cell Factor 1 Regulates B Cell Gene Networks by Activation, Repression, and Transcription- Independent Poising of Chromatin

Immunity (Cambridge, Mass.), 2010-05, Vol.32 (5), p.714-725

2010

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Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2

Nature communications, 2019-08, Vol.10 (1), p.3477-16, Article 3477

2019

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Alternative polyadenylation mediates genetic regulation of gene expression

eLife, 2020-06, Vol.9

2020

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Single-cell genomics improves the discovery of risk variants and genes of atrial fibrillation

Nature communications, 2023-08, Vol.14 (1), p.4999-18, Article 4999

2023

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Two Pif1 Family DNA Helicases Cooperate in Centromere Replication and Segregation in Saccharomyces cerevisiae

Genetics (Austin), 2019-01, Vol.211 (1), p.105-119

2019

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Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees

eLife, 2021-02, Vol.10

2021

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Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient

mBio, 2024-01, Vol.15 (1), p.e0283023-e0283023

2024

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Simultaneous Measurement of DNA Methylation and Nucleosome Occupancy in Single Cells Using scNOMe-Seq

Methods in molecular biology (Clifton, N.J.), 2023, Vol.2611, p.231

2023

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What are super-enhancers?

Nature genetics, 2015-01, Vol.47 (1), p.8-12

2015

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PPARG binding landscapes in macrophages suggest a genome-wide contribution of PU.1 to divergent PPARG binding in human and mouse

PloS one, 2012-10, Vol.7 (10), p.e48102-e48102

2012

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Single-cell ATAC-seq: strength in numbers

Genome Biology, 2015-08, Vol.16 (1), p.172-172, Article 172

2015

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Abstract 1128: Metastasis suppressor RKIP modulates gene expression variance in triple negative breast cancer

Cancer research (Chicago, Ill.), 2019-07, Vol.79 (13_Supplement), p.1128-1128

2019

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Abstract PO-030: Characterizing mechanisms for inhibiting metastasis in triple negative breast cancer

Cancer research (Chicago, Ill.), 2020-11, Vol.80 (21_Supplement), p.PO-030-PO-030

2020

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Abstract 2697: Single cell RNA sequencing and tumor cell heterogeneity in metastatic triple-negative breast cancer

Cancer research (Chicago, Ill.), 2020-08, Vol.80 (16_Supplement), p.2697-2697

2020

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Tu1248 MUCOSAL FIBROBLASTS SUPPORT EPITHELIAL-FIBROBLAST NICHE REORGANIZATION AND RECRUITMENT OF MYELOID CELLS IN CROHN'S DISEASE AT SINGLE CELL LEVEL

Gastroenterology (New York, N.Y. 1943), 2023-05, Vol.164 (6), p.S-1007-S-1007

2023

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631 THE SINGLE-CELL LANDSCAPE OF GENETIC MODULES BASED ON INFLAMMATORY BOWEL DISEASE SEVERITY

Gastroenterology (New York, N.Y. 1943), 2023-05, Vol.164 (6), p.S-123-S-124

2023

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MHC class II antigen presentation by intestinal epithelial cells fine-tunes bacteria-reactive CD4 T-cell responses

Mucosal immunology, 2024-06, Vol.17 (3), p.416-430

2024

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Sa1797 SINGLE-CELL GENE EXPRESSION AND CHROMATIN ACCESSIBILITY PROFILING REVEALS PROFOUND CELLULAR AND EPIGENETIC PLASTICITY OF INTESTINAL POUCHES FROM ULCERATIVE COLITIS PATIENTS

Gastroenterology (New York, N.Y. 1943), 2023-05, Vol.164 (6), p.S-436-S-436

2023

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TMIC-32. PARALLEL SINGLE CELL NUCLEOSOME OCCUPANCY AND RNA SEQUENCING ON RECURRENT GBM

Neuro-oncology (Charlottesville, Va.), 2019-11, Vol.21 (Supplement_6), p.vi254-vi254

2019

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Simultaneous measurement of chromatin accessibility, DNA methylation, and nucleosome phasing in single cells

GoM DE: interpreting structure in sequence count data with differential expression analysis allowing for grades of membership

Systematic Comparison of High-throughput Single-Cell and Single-Nucleus Transcriptomes during Cardiomyocyte Differentiation

PIF1 family DNA helicases suppress R-loop mediated genome instability at tRNA genes

Regulation of Transcription through Acetylation of H3K122 on the Lateral Surface of the Histone Octamer

Transcription factor Ebf1 regulates differentiation stage-specific signaling, proliferation, and survival of B cells

Early B Cell Factor 1 Regulates B Cell Gene Networks by Activation, Repression, and Transcription- Independent Poising of Chromatin

Pluripotency reprogramming by competent and incompetent POU factors uncovers temporal dependency for Oct4 and Sox2

Alternative polyadenylation mediates genetic regulation of gene expression

Single-cell genomics improves the discovery of risk variants and genes of atrial fibrillation

Two Pif1 Family DNA Helicases Cooperate in Centromere Replication and Segregation in Saccharomyces cerevisiae

Divergence in alternative polyadenylation contributes to gene regulatory differences between humans and chimpanzees

Bile acid fitness determinants of a Bacteroides fragilis isolate from a human pouchitis patient

Simultaneous Measurement of DNA Methylation and Nucleosome Occupancy in Single Cells Using scNOMe-Seq

What are super-enhancers?

PPARG binding landscapes in macrophages suggest a genome-wide contribution of PU.1 to divergent PPARG binding in human and mouse

Single-cell ATAC-seq: strength in numbers

Abstract 1128: Metastasis suppressor RKIP modulates gene expression variance in triple negative breast cancer

Abstract PO-030: Characterizing mechanisms for inhibiting metastasis in triple negative breast cancer

Abstract 2697: Single cell RNA sequencing and tumor cell heterogeneity in metastatic triple-negative breast cancer

Tu1248 MUCOSAL FIBROBLASTS SUPPORT EPITHELIAL-FIBROBLAST NICHE REORGANIZATION AND RECRUITMENT OF MYELOID CELLS IN CROHN'S DISEASE AT SINGLE CELL LEVEL

631 THE SINGLE-CELL LANDSCAPE OF GENETIC MODULES BASED ON INFLAMMATORY BOWEL DISEASE SEVERITY

MHC class II antigen presentation by intestinal epithelial cells fine-tunes bacteria-reactive CD4 T-cell responses

Sa1797 SINGLE-CELL GENE EXPRESSION AND CHROMATIN ACCESSIBILITY PROFILING REVEALS PROFOUND CELLULAR AND EPIGENETIC PLASTICITY OF INTESTINAL POUCHES FROM ULCERATIVE COLITIS PATIENTS

TMIC-32. PARALLEL SINGLE CELL NUCLEOSOME OCCUPANCY AND RNA SEQUENCING ON RECURRENT GBM

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