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How trophic impasses structure coastal food webs? Insights from ECOPATH modelling

Estuarine, coastal and shelf science, 2024-04, Vol.299, p.108691, Article 108691

2024

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Stomach content and stable isotope analyses provide complementary insights into the trophic ecology of coastal temperate bentho-demersal assemblages under environmental and anthropogenic pressures

Marine environmental research, 2022-12, Vol.182, p.105770-105770, Article 105770

2022

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Spatio-temporal patterns in stable isotope composition of a benthic intertidal food web reveal limited influence from salt marsh vegetation and green tide

Marine environmental research, 2022-03, Vol.175, p.105572-105572, Article 105572

2022

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Fish community responses to green tides in shallow estuarine and coastal areas

Estuarine, coastal and shelf science, 2016-06, Vol.175, p.79-92

2016

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Characterizing spatio-temporal changes in benthic communities: Taxonomic and functional trajectories of intertidal assemblages in the bay of Saint-Brieuc (English Channel)

Estuarine, coastal and shelf science, 2021-11, Vol.262, p.107603, Article 107603

2021

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Extending community trajectory analysis: New metrics and representation

Ecological modelling, 2021-01, Vol.440, p.109400, Article 109400

2021

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Modifications de l'hydrologie du Séran (affluent du Haut-Rhône français, Ain) de 1976 à 1995: Gestion de l'environnement dans les territoires alpins : savoir-faire, méthodologies, concepts

Revue de géographie alpine, 1997, Vol.85 (2), p.23-32

1997

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Endoplasmic Reticulum Transport of Glutathione by Sec61 Is Regulated by Ero1 and Bip

Molecular cell, 2017-09, Vol.67 (6), p.962-973.e5

2017

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The Promises and Pitfalls of Machine Learning for Detecting Viruses in Aquatic Metagenomes

Frontiers in microbiology, 2019-04, Vol.10, p.806-806

2019

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Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity

PLoS computational biology, 2019-11, Vol.15 (11), p.e1006863

2019

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The dynamic wound microbiome

BMC medicine, 2020-11, Vol.18 (1), p.358-358, Article 358

2020

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Bacteroides abundance drives birth mode dependent infant gut microbiota developmental trajectories

Frontiers in microbiology, 2022-10, Vol.13, p.953475-953475

2022

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A cohort study in family triads: impact of gut microbiota composition and early life exposures on intestinal resistome during the first two years of life

Gut microbes, 2024-12, Vol.16 (1), p.2383746

2024

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Reexamining the Function of Glutathione in Oxidative Protein Folding and Secretion

Antioxidants & redox signaling, 2017-11, Vol.27 (15), p.1178

2017

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Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data

Nucleic acids research, 2021-01, Vol.49 (D1), p.D792

2021

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Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems

Frontiers in microbiology, 2021-12, Vol.12, p.765268-765268

2021

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An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny

Frontiers in microbiology, 2023-09, Vol.14

2023

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Phage hunters: Computational strategies for finding phages in large-scale ‘omics datasets

Virus research, 2018-01, Vol.244, p.110-115

2018

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Stakeholder Perceptions of Offshore Wind Power: A Fuzzy Cognitive Mapping Approach

Society & natural resources, 2016-08, Vol.29 (8), p.916-931

2016

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Human milk oligosaccharide composition is affected by season and parity and associates with infant gut microbiota in a birth mode dependent manner in a Finnish birth cohort

EBioMedicine, 2024-06, Vol.104, p.105182, Article 105182

2024

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Sources of gut microbiota variation in a large longitudinal Finnish infant cohort

EBioMedicine, 2023-08, Vol.94, p.104695-104695, Article 104695

2023

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Libra: scalable k-mer–based tool for massive all-vs-all metagenome comparisons

Gigascience, 2019-02, Vol.8 (2)

2019

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Ontology-driven analysis of marine metagenomics: what more can we learn from our data?

Gigascience, 2022-12, Vol.12

2022

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Ten simple rules for organizing a data science workshop

PLoS computational biology, 2020-10, Vol.16 (10), p.e1008226-e1008226

2020

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iMicrobe: Tools and data-driven discovery platform for the microbiome sciences

Gigascience, 2019-07, Vol.8 (7)

2019

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How trophic impasses structure coastal food webs? Insights from ECOPATH modelling

Stomach content and stable isotope analyses provide complementary insights into the trophic ecology of coastal temperate bentho-demersal assemblages under environmental and anthropogenic pressures

Spatio-temporal patterns in stable isotope composition of a benthic intertidal food web reveal limited influence from salt marsh vegetation and green tide

Fish community responses to green tides in shallow estuarine and coastal areas

Characterizing spatio-temporal changes in benthic communities: Taxonomic and functional trajectories of intertidal assemblages in the bay of Saint-Brieuc (English Channel)

Extending community trajectory analysis: New metrics and representation

Modifications de l'hydrologie du Séran (affluent du Haut-Rhône français, Ain) de 1976 à 1995: Gestion de l'environnement dans les territoires alpins : savoir-faire, méthodologies, concepts

Endoplasmic Reticulum Transport of Glutathione by Sec61 Is Regulated by Ero1 and Bip

The Promises and Pitfalls of Machine Learning for Detecting Viruses in Aquatic Metagenomes

Identification and quantitation of clinically relevant microbes in patient samples: Comparison of three k-mer based classifiers for speed, accuracy, and sensitivity

The dynamic wound microbiome

Bacteroides abundance drives birth mode dependent infant gut microbiota developmental trajectories

A cohort study in family triads: impact of gut microbiota composition and early life exposures on intestinal resistome during the first two years of life

Reexamining the Function of Glutathione in Oxidative Protein Folding and Secretion

Planet Microbe: a platform for marine microbiology to discover and analyze interconnected 'omics and environmental data

Ontology-Enriched Specifications Enabling Findable, Accessible, Interoperable, and Reusable Marine Metagenomic Datasets in Cyberinfrastructure Systems

An extended catalog of integrated prophages in the infant and adult fecal microbiome shows high prevalence of lysogeny

Phage hunters: Computational strategies for finding phages in large-scale ‘omics datasets

Stakeholder Perceptions of Offshore Wind Power: A Fuzzy Cognitive Mapping Approach

Human milk oligosaccharide composition is affected by season and parity and associates with infant gut microbiota in a birth mode dependent manner in a Finnish birth cohort

Sources of gut microbiota variation in a large longitudinal Finnish infant cohort

Libra: scalable k-mer–based tool for massive all-vs-all metagenome comparisons

Ontology-driven analysis of marine metagenomics: what more can we learn from our data?

Ten simple rules for organizing a data science workshop

iMicrobe: Tools and data-driven discovery platform for the microbiome sciences

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