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BOSO: A novel feature selection algorithm for linear regression with high-dimensional data

PLoS computational biology, 2022-05, Vol.18 (5), p.e1010180-e1010180

2022

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A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism

PLoS computational biology, 2022-03, Vol.18 (3), p.e1009395-e1009395

2022

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An in-silico approach to predict and exploit synthetic lethality in cancer metabolism

Nature communications, 2017-09, Vol.8 (1), p.459-9, Article 459

2017

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gMCS: fast computation of genetic minimal cut sets in large networks

Bioinformatics, 2019-02, Vol.35 (3), p.535-537

2019

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Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method

PloS one, 2016-05, Vol.11 (5), p.e0154583-e0154583

2016

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Direct calculation of minimal cut sets involving a specific reaction knock-out

Bioinformatics, 2016-07, Vol.32 (13), p.2001-2007

2016

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An automated network-based tool to search for metabolic vulnerabilities in cancer

Nature communications, 2024-10, Vol.15 (1), p.8685-15, Article 8685

2024

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Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks

Bioinformatics (Oxford, England), 2014-08, Vol.30 (15), p.2197-2203

2014

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gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python

Bioinformatics (Oxford, England), 2024-06, Vol.40 (6)

2024

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An extended reconstruction of human gut microbiota metabolism of dietary compounds

Nature communications, 2021-08, Vol.12 (1), p.4728-4728, Article 4728

2021

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Computational approach for collection and prediction of molecular initiating events in developmental toxicity

Reproductive toxicology (Elmsford, N.Y.), 2020-06, Vol.94, p.55-64

2020

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Computing the shortest elementary flux modes in genome-scale metabolic networks

Bioinformatics, 2009-12, Vol.25 (23), p.3158-3165

2009

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In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes

PloS one, 2014-08, Vol.9 (8), p.e103998-e103998

2014

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On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models

Bioinformatics, 2020-03, Vol.36 (6), p.1986-1988

2020

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CANCERTOOL: a visualization and representation interface to exploit cancer datasets

Cancer research (Chicago, Ill.), 2018-11, Vol.78 (21), p.6320-6328

2018

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Path finding methods accounting for stoichiometry in metabolic networks

Genome biology, 2011-05, Vol.12 (5), p.R49-R49, Article R49

2011

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Joint analysis of miRNA and mRNA expression data

Briefings in bioinformatics, 2013-05, Vol.14 (3), p.263-278

2013

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BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities

Bioinformatics (Oxford, England), 2024-05, Vol.40 (5)

2024

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ALAD Inhibition by Porphobilinogen Rationalizes the Accumulation of δ‑Aminolevulinate in Acute Porphyrias

Biochemistry (Easton), 2022-11, Vol.61 (21), p.2409-2416

2022

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rMTA: robust metabolic transformation analysis

Bioinformatics, 2019-11, Vol.35 (21), p.4350-4355

2019

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Review and meta-analysis of the genetic Minimal Cut Set approach for gene essentiality prediction in cancer metabolism

Briefings in bioinformatics, 2024-03, Vol.25 (3)

2024

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Synthetic lethality in large-scale integrated metabolic and regulatory network models of human cells

NPJ systems biology and applications, 2023-07, Vol.9 (1), p.32-32, Article 32

2023

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Gene expression derived from alternative promoters improves prognostic stratification in multiple myeloma

Leukemia, 2021-10, Vol.35 (10), p.3012-3016

2021

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BOSO: A novel feature selection algorithm for linear regression with high-dimensional data

A network-based approach to integrate nutrient microenvironment in the prediction of synthetic lethality in cancer metabolism

An in-silico approach to predict and exploit synthetic lethality in cancer metabolism

gMCS: fast computation of genetic minimal cut sets in large networks

Assessment of FBA Based Gene Essentiality Analysis in Cancer with a Fast Context-Specific Network Reconstruction Method

Direct calculation of minimal cut sets involving a specific reaction knock-out

An automated network-based tool to search for metabolic vulnerabilities in cancer

Direct calculation of elementary flux modes satisfying several biological constraints in genome-scale metabolic networks

gMCSpy: efficient and accurate computation of genetic minimal cut sets in Python

An extended reconstruction of human gut microbiota metabolism of dietary compounds

Computational approach for collection and prediction of molecular initiating events in developmental toxicity

Computing the shortest elementary flux modes in genome-scale metabolic networks

In-silico prediction of key metabolic differences between two non-small cell lung cancer subtypes

BET inhibitors down-regulate the expression of the essential lncRNA SMILO in multiple myeloma through regulation of the transcription factor FLI1

On the inconsistent treatment of gene-protein-reaction rules in context-specific metabolic models

CANCERTOOL: a visualization and representation interface to exploit cancer datasets

Path finding methods accounting for stoichiometry in metabolic networks

Joint analysis of miRNA and mRNA expression data

BN-BacArena: Bayesian network extension of BacArena for the dynamic simulation of microbial communities

ALAD Inhibition by Porphobilinogen Rationalizes the Accumulation of δ‑Aminolevulinate in Acute Porphyrias

rMTA: robust metabolic transformation analysis

Review and meta-analysis of the genetic Minimal Cut Set approach for gene essentiality prediction in cancer metabolism

Synthetic lethality in large-scale integrated metabolic and regulatory network models of human cells

Characterization of complete lncRNAs transcriptome reveals the functional and clinical impact of lncRNAs in multiple myeloma

Gene expression derived from alternative promoters improves prognostic stratification in multiple myeloma

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